MmuINT0124051 @ mm10
Intron Retention
Gene
ENSMUSG00000053293 | Pom121
Description
nuclear pore membrane protein 121 [Source:MGI Symbol;Acc:MGI:2137624]
Coordinates
chr5:135386824-135388717:-
Coord C1 exon
chr5:135388637-135388717
Coord A exon
chr5:135386996-135388636
Coord C2 exon
chr5:135386824-135386995
Length
1641 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
CACTTCTTCCTTTCTCTTAGGCC
3' ss Score
9.56
Exon sequences
Seq C1 exon
GCGCCATGATAGCGGTGGGAGCGGACATTCAGCATTCGAGCCCCTTGTGGCCAACGGAGTCCCTGCTGCATTTGTGCCTAA
Seq A exon
GTAAGTGAGAGCCTCAGTGATGGGATGCTGCAGCTTAGTGATCCTCAGTGATGGGATGCTGCAGCTTAGTGATCCTCAGTGATGGGATGCTGCAGCTTAGAGGTCCTCAGTGATGGGATGCTGCAGCTTAGTGAGATCCTCGGTGACGGGATGCTGCAGCTTAGTGGTCCTCAGTGATGGGATGCTGCAGCTTAGTGATCCTCAGTGATGGGATGCTGCAGCTTAGTGGTCCTCAGTGATGGGATGCTACTGCTTAGTGAGATCCTCGGTGACGGGATACTGCTGGTTGGGAAAAGTGTTTCTGACAGTGGCTGCCCTGTCACCTCTCTCTACTGTCTGCACTGTCCACTTCACATCTGGAGGAACATTCTAACTAATTGCCATGACTAGATATTTCCTTTCCAGTTTCTTTCCAGGTTTTTCCATGTTTAATGACATTTTAGATAAATATATGTTGTGCTAATGTTGTGTATATACAATGACTGTTTATATATTGTGCTAGTGTTGCGGTAATCTTTTTGGAGTAAGTTCTCTGATAGCTGTGAGAGAAGAGAGATTCATTAGTTGACTGAAGCCAGGATAGCTCCTAAAAAGATCTTGATTGGTCCTGGGCCCGTTCATATTCTCATCTTCTATTCATCTAAACTATGAGGTGGGACGAATAAGCAAGTGCGATTTTACAGATGCGTATGAGCAGTCAGCTTGTTTTAAAGGTGTATTATAGATGACAGGTGTAAGCTCTTGTGGTCAGGTTGTTAAGAGCAACAAACTGGTAATTTTCCAGGTATTCTGTTCCAAGTAGTAAGTGAAGTGATGCTTAGATATGGGCCGTAAGCAGTGCTTTAAGTAAACCACTAACTAAAGCAGTCAGCCAGTGTCTCGTGCTTGCTCTGTCTCACTCTGCTTCACTAACATGGTGCAGTTGACCCTTCACAAATGGACCACAGGCTTCTGCAGGGCAGGAAGTGTTGATATGGAGTGTATGAGAGGAAGTTTGCATAGAAGGTGCATAAGTTCCAGTGTGGTAAAAAGGCTCTGTCAAGCCTTGCACTCAGCTCACTGTGTTGCACCGTGGGAGACATGCATACACAGTGTGGACTGCTGAGGTAGGAAAGCCTGACAGGGGCTGGCTTTGGAGGCTCCAGCCTAGAGGAGGCACAGGCATCTGGGAGCGAGCCAAGATGATGGTGTGCTAGTGGAAGGAGGGGAACATTGGCTGCCTCTGCTGCAGTTGTCAGCGAACTGGTTTGTGGTTGATGCACTTGCCTGGGAAATGGTAAGAGGACCATACTGTAGTAGGGCTAGGTAACACACATTGACAGAAAGGATTATGGGAGATTTCTCTTTCAGTTAGAGGCTTAATGATTTTTCTCTTAGCAGCTTTATTGAGGGATCATTGACAGACATTACGTTTTTGTCCCCATGACACCACAGTCAAGGTGTAACCCTTCCTGTTGTGTTTCCCGTGCTGTGCTTTTACCCAGTCACTTTGTCAGACATAGGCAGCCATGTCATCTGCTGACAGTGGCCTTGAGGAACATTGTGGTGGTCTTTCAGGTTTATTCAGAAAGGTGAGGCACCATGGTGGAAATAGCAGAATACGCCTGCAGTAGCGCATGTACACTTCTTCCTTTCTCTTAG
Seq C2 exon
GCCTGGCTCCCTGAAGAGAAGTCTGGCTTCCCAGAGCTCAGATGACCACTTGAACAAACGGTCTCGCACCTCCTCTGTGAGCTCCCTGGCTAGTGCGTGCACAGGAGGCATCCCCAGTTCTAGCCGCAATGCCATCACCAGCTCCTACAGCTCCACCCGTGGCATCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053293:ENSMUST00000111171:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(11.3=100)
A:
NA
C2:
PF152291=POM121=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATAGCGGTGGGAGCG
R:
CTGTGAGATGCCACGGGTG
Band lengths:
249-1890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types