GgaINT0132144 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NE56]
Coordinates
chr19:307280-307832:-
Coord C1 exon
chr19:307752-307832
Coord A exon
chr19:307452-307751
Coord C2 exon
chr19:307280-307451
Length
300 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
AAATCTTTATTGTTCTGCAGGCC
3' ss Score
8.05
Exon sequences
Seq C1 exon
GCGCCATGACAGCAGCGGAAGTGGGCAGTCGGCATTTGAGCCCCTGGTCGCCAACGGTGCCCCCGCCTCTCTTATACCCAA
Seq A exon
GTAAGTGCCCATCGGGCCAAAAGCAATTGATGCTAGCTGAGGGATGAGTATAAAAGCCTGCAGGCTCTGGACAAGGTGCCCAGCAAAGGATGGTGGTGGCCATACCTCGTGGCATCACCCAGCCTTAGAGCTGTGCTGAGTGGGTGCAGGCTGGGGGCCACGGGGCTGCACTGCTGCGGGGACCTCTTCCTGAGCTCTGCGCTGCAAAAAAGAGCTGCGTTGCTTCCTCGATGTGCCCTGCGATGCAAAGGCCTGTGGGTAGGCTGGTGGGGAGATGCTGAAATCTTTATTGTTCTGCAG
Seq C2 exon
GCCTGGCTCTCTGAAGAGAGGCCTTGCTTCGCAGTGCCCCGATGACTGCTCAAACAAGAGGTCACGCACCTCCTCCATGAGCTCCCTCAACAATACGTACACAAGTGGAATCCCCAGCTCCCTGCGCAATGCCATCGCCAGCTCCTACAGCTCCAGCCGGGGCCTCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021694:ENSGALT00000001368:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.879
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(11.2=100)
A:
NA
C2:
PF152291=POM121=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGACAGCAGCGGAAGTG
R:
CCGGCTGGAGCTGTAGGAG
Band lengths:
238-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]