BtaINT0003821 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BG57]
Coordinates
chr25:34345168-34346006:-
Coord C1 exon
chr25:34345933-34346006
Coord A exon
chr25:34345293-34345932
Coord C2 exon
chr25:34345168-34345292
Length
640 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
AAGATTAAGTCTTTCTTTAGTTG
3' ss Score
-0.22
Exon sequences
Seq C1 exon
AGAAGAGGAGCTTTCTCATCATTCTAGTTCTTCAACTCCATTGGTAACAGACAAGGAGTCCCAGGGAGAAAAGA
Seq A exon
GTAAGTTGATGAGTGCACTAGAGCGGCTATTGGTGGAAGTATTGAGCATTGCTTTGTCAAGGGCCTGGTGGATACAGAGAGAGATGTTTCTGTCTTTCAGAGGTTTATAGTCAGGTAAGGGAGAAAGGTGACTCAGAGAAATACAGTATAATATGTGATAACAGTAGGCTATGGATAAGTTTAGGTTGAGGTATCTGTGAGCAGTCCAGATGACTATTGTCCAGTAAACAGTTTTCTGGGCTTCCCTGATGGCTCAGTGGTAAAGAATCCACCTGCTAATACAGGAGACACAGGTTTAATCCATGGGTAGGGAAGATCTCCTGGAGAAGGAAATGGCAACCTACACCAGTATTCTTGCCTGAAAAATCCCATGGACAGAAGACCCTGGCAGGCTACAGTCCATAGGGTTGCAAAGAGTTGGACATGACTGAACAACAGAAGTAGTTGTATACTTTGATTTGGAGCAATTCTCCCTTTATATCCTCTTGACTATTAGAAGTAGTCTAGCAAACACCATCCAAGAGCCCAAATCATGGAAAATAGAATCTTTCAGAGATACCCAGTGAGAATTCCGTGTTAAAAACAGGAGATAGATAACCTGTCCATTTCTGGCAGAGAAGAAGATTAAGTCTTTCTTTAG
Seq C2 exon
TTGCAGATCCAACCACAGGGAAGAAGCAGAACTCATGGAATTCCCCATCAACACCTGGCAGCTCCGGGCAGCGTAAACGGAAGGTTCAGCTGCTGCCCTCCAGGCGAGGAGACCAGCTGACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017939:ENSBTAT00000023854:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(10.5=100)
A:
NA
C2:
PF152291=POM121=FE(17.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCTTTCTCATCATTCTAGT
R:
AAGGTCAGCTGGTCTCCTCG
Band lengths:
194-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]