GgaINT0132145 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NE56]
Coordinates
chr19:304691-305596:-
Coord C1 exon
chr19:305526-305596
Coord A exon
chr19:304819-305525
Coord C2 exon
chr19:304691-304818
Length
707 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTGACTTGTCTCCTTCAGCAG
3' ss Score
7.48
Exon sequences
Seq C1 exon
GGAGGAGGAGACGCATTGCTCCAACACTTCCACCCCAGTGAAATCAGACAAGGAGCTGCAGACGGAGAAAG
Seq A exon
GTGAGCATAAGCTGACACCAGTTCTGTGTGGGTGTCAGTGTATACAAGCAGTGGGGTGGGACATCTCTTAGGTCTTCAGGTACGATTGGCTTGAGACGTCACCTGGCAACTTGGAGCATGCTGGTCCAGGGGTAGTGGTGGTTCTGCTGCCCTGAATGGGTTTTCAGGTGATGAGCAAGAGATGCTGTGCACCAGCAGATGCATGGGAGCTGGCTTGCAAGAGGGAGCCCTACGGCTGCCCCAGGACCTACTGTCAGCCTCAGGGCAAGGCGTGCCATGCTGGAAGAACCATGATCAGATTCCAGGCTGGGCCTGTTCCCATGTTTTCTCAGTCTAAGCGAGCAGGACATCCTGTGTCCATCACAACTAGCTGCCCAGGTCCTGTGGTGCAGCACTAGATGTGGCTCTTGTAGCCTGCCTGGCTTGTGGTTCAGGTAGGCAGATTGCAAGAGCAATTTGGAAGTGTGGAAGTGGGGAAGGAGTTACTGCCCCACTGAAGGCTGGCAGGCATCAGGTACCAGACTGCCCCAGGATGTGCTACAGACAGCTGCTCTTCGGGCTCTTGAAGCCTTGTCCTCAGCTCATAGCTGTATCCCTGGCTCTGCCCTCAGACTGGGTCATCCAGAGAGGAGTTGGAAGGGATGGCCCTCCTGGCATGAGCCGGACCGTTCCTCTGCCCAGAGCTGGCTCTGACTTGTCTCCTTCAG
Seq C2 exon
CAGTGGTGGAGATGCCTGTGCGGAGGAAGCGTGGTTCCCTGAGCCCACCATCTGCATCGGGGAGCAGTGGCAAGCGCAAGCGGAAGATCCAGTTGCTGTCGTCTCGCCGGGGGGACCAGCTGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021694:ENSGALT00000001368:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.895
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(10.0=100)
A:
NA
C2:
PF152291=POM121=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAGACGCATTGCTC
R:
CAGTGCCAGCTGGTCCCC
Band lengths:
198-905
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]