BtaINT0004442 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MEU8]
Coordinates
chr26:16157931-16159314:+
Coord C1 exon
chr26:16157931-16158072
Coord A exon
chr26:16158073-16158796
Coord C2 exon
chr26:16158797-16159314
Length
724 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TCTGTGTTTGTTGTTTCCAGGGA
3' ss Score
10.62
Exon sequences
Seq C1 exon
GGCACAGGTATATTAACATCACTGACTTCTGTGCTATATGATGACAAAGAATTTCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTGGATGAGAGTGGCAACTTTAGGAAGAGTGACCATTTCATGGCTTTCTCAACAG
Seq A exon
GTAATATTTTTTTTTCTCCATTCAGTACTTTAGAGGACAGGATACCTTCTAAGGATCAGTTGGGAGTTACAAAGTACCTACCCTGGGGCTGGTAGAAATGCTCTTTGTCCATGATGAGGGGTAGCAGCCCAATAACTATGCTCTTTCCATCCCCATGAAACATCCTCATTATTGGGCTAGATTACTGAAACTTTGGAGAGGTGACCCAGTTCTTTCCATTTAGAAATAAAACTTGAGCTGGGAACTGAAAATATCAGAGAACTACATCTTAGCCAAAAAAAAAAAGTGTGTTATAAAACTTGAAACTTAAAGGTGTGTTGGAGTTTGATGAAGAGTAGGTATACTTAGAGCAGAGAACAGAGGCTGTGAAGAATGAAAAGAAACATGTGGGACTACTAGACTAGGATCAGAAAATACAGCCAGTATACGTGGCTTTCTAGAAAAAGATGGGTAGAAATTTGAAAATATGAAATTGCAGTTATAATGCATGAATAATTTAATGAAGTGTTTGGAATAGTCAGTAAATATTTCTTGAAGGAATGATATTTATTATGATAAGATGTTAGGTGGATAGCATATGTGTTCACCCTTTTCCCATCTGTCTATCCAGCCATTCCATCCATCCATTCAAACATTCATCAAATGGCTACTACATAGTCTCTTTTCTGACAGCCAGAAAGACAGAGTTCAAGGAGTATGTACCCTCTGTGTTTGTTGTTTCCAG
Seq C2 exon
GGAAACGGATTTGTGTGGGAGAGGGCCTGGCCCGCATGGAGCTGTTTTTATTCCTGACCACAATTTTACAAAACTTTACCTTGAAATCTGTGGTTGACCCAAAGGACCTCGACACCACCCCAGTTGTCAATGGGTTACTTTCTGTGCCACCTTTTTACCAGCTCTGTTTCATTCCTGTGTGAGGAATGTTAGATCCTCTAGTTTCTTCAGTGATGTTGTCTTCAACTCCCTCTCATCTGCGGCATTGTTCACCTGCTTCCCATCATCTTTTCTGAGAGTGCCTGCTCTGACCTCTCTTCATTTATTGTGTAATTTCACTACAGAAATGTATCTGCTGTTCTTCATACTCTGTAACATCTATATTGGCCTCCAGATATGCAAATAATTACATAATATTGAGTAGTTCTGTGTGCATAGTACTATGCGCTCCACACAATATAGAACAGGATGATCACTGTGTACAATACAGAGCTATTTCTGATATGCATATTCCTAATAAAACACATAATTTGATAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020375:ENSBTAT00000008918:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
NA
C2:
PF0006717=p450=PD(12.1=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCCACTTTCTGGATGAG
R:
TCAGAGCAGGCACTCTCAGAA
Band lengths:
357-1081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]