MmuINT0045036 @ mm10
Intron Retention
Gene
ENSMUSG00000049685 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:MGI Symbol;Acc:MGI:109612]
Coordinates
chr7:26819342-26821205:+
Coord C1 exon
chr7:26819342-26819483
Coord A exon
chr7:26819484-26820647
Coord C2 exon
chr7:26820648-26821205
Length
1164 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TCCATCAATTGTTTCTACAGGAA
3' ss Score
9.19
Exon sequences
Seq C1 exon
GGTACAGATGTGTATCCCCTGTTTGGCTCAGTCCTCAAAGATCCCAAATACTTCCGCTACCCAGATGCTTTTTATCCTCAACACTTCCTGGATGAACAGGGGCGCTTCAAGAAGAATGATGCCTTTGTGGTCTTTTCCTCTG
Seq A exon
GTAAGTAATTATGCCTAAATTTGCCCCAGATAAGTACTAGAACAGTCTTTCCAAGGTCTATGTTATAGACTTATTAAAATCCTAAAATTTCAGATCAGGGAATATTAGAATCATTCACTTTAATGACTAGGTTAAAAAAAAAGTTAGAGCAAAAGATTGTTGTCTATGACTAATCTCAGTACTCAAACAACGGTGGTAATAAGATTTCAGGAGAAAGGCTAGCCTGGGCTAACGTGAGATCCTGACTTTAAAACAATTGGAAATAATGAAAAAATAATAATAAAATGTTAGAGCAACAAAACCAAACATTTAGTAAACCTAGCCATAGGATGTTAAGAATCAAATTAAAAGTATTTCATGTTTTGTCAGCCATATGACCCTTGTCTGAGCTACTTGTGTCTGCCATGTACTATGTACTGTGGACAGCCATGGCCACTGGTAACACTTAAGTGAATGGTACTTATGTGTGAAAATGTAAATACTCTTATTCAAGGGCACTGGGACTCATTTAACTCACATGAGATATTCTTTTTCTCTGAATATATCCAAACATTCTAAAAGATGATAGGCATTCATGCCATGCAAATACAAAGCAGCTTCATAGAGTCACCTCACAAAAGTAAGGTAGCCTGTGAGAGGTTGTGGCATCATGGGCAGCCTAGAGCCTGGGTAAATTGTTGCACTGCTCAACCATGAGATAGAGGTTAATCCCCTTCCCACTGTTGAAACAGCTCATGGCAATCAGGGAGGTATCTTTGATGTCTAAGGCATTTGAAATGCCTTTGAGGAATTGAAATGAACAGTTTTTTTTTGGTTTGTTTGTTTGTTTTCCTGATCTGGGGATGGAATTCACACACTCGGAGCAAATGTTCTCACTGAAATGCATACCTCAATCTCTCACTGGTTTGAGTCACACCCAGCCCTCATGGATCCTTTGGAACCTGTCTATCTGATTCTAACCCAGATAGACTAGGTCAGCAAAAAGGTAGCTGCCACCTGCCCAGTCCCTCTAAGGGACAGGTATCAGTGGGACCCCAGTAAATCTTAATAACCCCACATCGTGGATACAGCCGTGGGCTAAGATGCTGAATAATCAGTCGAGGCTGCGTGGGGTGGTTATGGTAGGGACATGGCGCACACCTCCTCCATCAATTGTTTCTACAG
Seq C2 exon
GAAAGCGCATCTGCGTTGGGGAGGCCCTGGCCCGCATGGAACTCTTCCTTTACTTCACATCCATTCTTCAGAGGTTCTCCTTACGTTCTCTGGTGCCTCCTGCTGACATTGACATCGCTCACAAAATCTCAGGCTTTGGCAACATCCCCCCAGTTTATGAGCTCTGCTTCATGGCCCGCTGAGTGCCCACTGCAAGACCAGCCAAGAGTCATCTGAGAGCTGAGCTCTGCTGAAGTTCACACACACACACCATCTGCCTTCAATCCTCCATACTCCTTGAAGAGAGGTCACTCTCACTGTTGTTCTGAGACCATGGGTCAAGAGAGGTGTCTGGATATATAAACTAGGGTTCTAGTCACAATCTGGGGGAAAAGCCTGAGGGTTTCATTAAATTTCCTGAATTTTTCAACCTCAGTCTCAGTGGGCACCAAATTTACAGATGCTGTCAGCTTACATAATCTTTGTCTTTGCCCTGATATTGACCAGAATATACCTTGCAATTCTTTCCTGTTTGCTTTTATTTCTCCTCCCCAATAAAAAACTCAAAACTATTGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049685:ENSMUST00000040944:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTCCGCTACCCAGATGCT
R:
GCAGATGGTGTGTGTGTGTGA
Band lengths:
351-1515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types