MmuINT0045036 @ mm9
Intron Retention
Gene
ENSMUSG00000049685 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:MGI Symbol;Acc:MGI:109612]
Coordinates
chr7:27604361-27606216:+
Coord C1 exon
chr7:27604361-27604502
Coord A exon
chr7:27604503-27605666
Coord C2 exon
chr7:27605667-27606216
Length
1164 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TCCATCAATTGTTTCTACAGGAA
3' ss Score
9.19
Exon sequences
Seq C1 exon
GGTACAGATGTGTATCCCCTGTTTGGCTCAGTCCTCAAAGATCCCAAATACTTCCGCTACCCAGATGCTTTTTATCCTCAACACTTCCTGGATGAACAGGGGCGCTTCAAGAAGAATGATGCCTTTGTGGTCTTTTCCTCTG
Seq A exon
GTAAGTAATTATGCCTAAATTTGCCCCAGATAAGTACTAGAACAGTCTTTCCAAGGTCTATGTTATAGACTTATTAAAATCCTAAAATTTCAGATCAGGGAATATTAGAATCATTCACTTTAATGACTAGGTTAAAAAAAAAGTTAGAGCAAAAGATTGTTGTCTATGACTAATCTCAGTACTCAAACAACGGTGGTAATAAGATTTCAGGAGAAAGGCTAGCCTGGGCTAACGTGAGATCCTGACTTTAAAACAATTGGAAATAATGAAAAAATAATAATAAAATGTTAGAGCAACAAAACCAAACATTTAGTAAACCTAGCCATAGGATGTTAAGAATCAAATTAAAAGTATTTCATGTTTTGTCAGCCATATGACCCTTGTCTGAGCTACTTGTGTCTGCCATGTACTATGTACTGTGGACAGCCATGGCCACTGGTAACACTTAAGTGAATGGTACTTATGTGTGAAAATGTAAATACTCTTATTCAAGGGCACTGGGACTCATTTAACTCACATGAGATATTCTTTTTCTCTGAATATATCCAAACATTCTAAAAGATGATAGGCATTCATGCCATGCAAATACAAAGCAGCTTCATAGAGTCACCTCACAAAAGTAAGGTAGCCTGTGAGAGGTTGTGGCATCATGGGCAGCCTAGAGCCTGGGTAAATTGTTGCACTGCTCAACCATGAGATAGAGGTTAATCCCCTTCCCACTGTTGAAACAGCTCATGGCAATCAGGGAGGTATCTTTGATGTCTAAGGCATTTGAAATGCCTTTGAGGAATTGAAATGAACAGTTTTTTTTTGGTTTGTTTGTTTGTTTTCCTGATCTGGGGATGGAATTCACACACTCGGAGCAAATGTTCTCACTGAAATGCATACCTCAATCTCTCACTGGTTTGAGTCACACCCAGCCCTCATGGATCCTTTGGAACCTGTCTATCTGATTCTAACCCAGATAGACTAGGTCAGCAAAAAGGTAGCTGCCACCTGCCCAGTCCCTCTAAGGGACAGGTATCAGTGGGACCCCAGTAAATCTTAATAACCCCACATCGTGGATACAGCCGTGGGCTAAGATGCTGAATAATCAGTCGAGGCTGCGTGGGGTGGTTATGGTAGGGACATGGCGCACACCTCCTCCATCAATTGTTTCTACAG
Seq C2 exon
GAAAGCGCATCTGCGTTGGGGAGGCCCTGGCCCGCATGGAACTCTTCCTTTACTTCACATCCATTCTTCAGAGGTTCTCCTTACGTTCTCTGGTGCCTCCTGCTGACATTGACATCGCTCACAAAATCTCAGGCTTTGGCAACATCCCCCCAGTTTATGAGCTCTGCTTCATGGCCCGCTGAGTGCCCACTGCAAGACCAGCCAAGAGTCATCTGAGAGCTGAGCTCTGCTGAAGTTCACACACACACACCATCTGCCTTCAATCCTCCATACTCCTTGAAGAGAGGTCACTCTCACTGTTGTTCTGAGACCATGGGTCAAGAGAGGTGTCTGGATATATAAACTAGGGTTCTAGTCACAATCTGGGGGAAAAGCCTGAGGGTTTCATTAAATTTCCTGAATTTTTCAACCTCAGTCTCAGTGGGCACCAAATTTACAGATGCTGTCAGCTTACATAATCTTTGTCTTTGCCCTGATATTGACCAGAATATACCTTGCAATTCTTTCCTGTTTGCTTTTATTTCTCCTCCCCAATAAAAAACTCAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049685-Cyp2g1:NM_013809:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTCCGCTACCCAGATGCT
R:
GCAGATGGTGTGTGTGTGTGA
Band lengths:
351-1515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: