GgaINT0083456 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BY32]
Coordinates
chr3:108415623-108416996:+
Coord C1 exon
chr3:108415623-108415764
Coord A exon
chr3:108415765-108416808
Coord C2 exon
chr3:108416809-108416996
Length
1044 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CATTTCGCATTTCATTGCAGGGC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GGAACCTACATCATCCCCTTGCTGACCTCTGTCCTGCGAGACAAATCCCAGTGGGAGAAACCAGACATGTTCTATCCTGAACACTTCCTTGATTCCAAGGGAAAGTTCGTGAAGAAGGATGCTTTCATGCCATTTTCAGCAG
Seq A exon
GTACCTTCTCATTTTATTGACTGCTGTGTACCAATCTCAGACAGCTCAGACACATTCTGCTCTAAGACATGTGAATCTTTGGCTCTTTCCATATACAGCTGCATTTCTGGTATATACAAAGCATGCAGGAAATGTGGCTTCTGTATTTTTTCCTGGGGAACTAAGTTTAATTTTTTAATGTCCCTTTTCAAGAGTCCTCAGTAGTCTCAGCTGATCAGGTCTTCTTAACCTGAGACAACAAACAAGGTTCCACTATGTTAATACCTAAGTTCCTTTTAATAACAAAGGATGTAAAGAGGCTGCCATTGAGTCTCCTACACAGAGTGATGCTCACCTCATCTTACATACTTGCATGTTTTTCCAAAGCACAGGACATTCCTACTCTCACGATGATGCTCCTTTTCTAACATTTCTCCTGTTCTTCAGGCTCTGTCATTGTTCAGTAAAGATCCTATAATCAATTTCTGGCCAATTTCCACAATACTCTGCACTTTTTATACGCCTTGCATATATTTTGTGTGACATTTGAATATGCTTTTTCTCATCGTACTCAATATCTAACATATGATAAAATCTTTTTTTTTTTTTCTTTTTTTGGTAAAAGAATGTCTGATATTCCCAATTCATCATATTAGATCATATCATTTAGATATCATTTATATCATATTTAGATTTAGATTGTATTTCCATGCATTTATCCCCAAATACAAGCATAAAACCAACCCACTTTAGGAAAAGAAAATAATCACTAGGTGGCTTTATAATCACTCCTTTGAAGTCCAAGTATCTCTCCCATGCTCTCATGTACTTCTGAGTGCTGCTTTGTCCTTTGTTTGTACTTGGGACATGGCATTTCAAGTCACTGTTCAATTGGCGACCCTGCACATAGCAGGGGGTTGAAACTCAATGATCATTGTGGTCCTTTTCAACCCAGCCCATTCTATGATTCTATGAAAAGATGCTCAGAGGTGTTTCATATCTTCCAACCACTGAAGAAGCAGCTCCAGCTGATTCTGTTACCACACATTTCGCATTTCATTGCAG
Seq C2 exon
GGCGGAGGATCTGTGCCGGTGAGACTCTTGCCAAAATGGAGCTCTTCCTCTTCTTCACCAGCCTCCTGCAGAGGTTCACCTTCCAGCCTCCTCCCGGAGTTTCCTCCTCAGACCTGGACCTCAGCCCTGCTATTTCATTTAACGTTGTCCCCAAACCCTATAAAATCTGTGCTGTCGCACGCTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812:ENSGALT00000026936:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.5=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTACATCATCCCCTTGCTGA
R:
CTAAGAGCGTGCGACAGC
Band lengths:
327-1371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]