DreINT0054303 @ danRer10
Intron Retention
Gene
ENSDARG00000068283 | cyp2x10.2
Description
cytochrome P450, family 2, subfamily X, polypeptide 10.2 [Source:ZFIN;Acc:ZDB-GENE-060818-12]
Coordinates
chr7:51818735-51818914:-
Coord C1 exon
chr7:51818869-51818914
Coord A exon
chr7:51818773-51818868
Coord C2 exon
chr7:51818735-51818772
Length
96 bp
Sequences
Splice sites
5' ss Seq
AAAGTCAGT
5' ss Score
1.98
3' ss Seq
ATTCATGCCTTTCTCTGCAGGTG
3' ss Score
10.76
Exon sequences
Seq C1 exon
GGGACAATTATCATCCCATATCTGTCATCTTCTCTCAGAGAGGAAA
Seq A exon
GTCAGTGGAAGTTTCCACATGAGTTCAACCCTCAAAACTTCTTGAATGAAAAAGGAGAATTTGTGAAGAATGATGCATTCATGCCTTTCTCTGCAG
Seq C2 exon
GTGTGTGCTACATCAGTTTAATTAAACAGTATTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068283:ENSDART00000098688:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.1=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(0.3=7.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]