MmuINT0044813 @ mm9
Intron Retention
Gene
ENSMUSG00000066704 | Cyp2b19
Description
cytochrome P450, family 2, subfamily b, polypeptide 19 [Source:MGI Symbol;Acc:MGI:107303]
Coordinates
chr7:27552123-27557649:+
Coord C1 exon
chr7:27552123-27552264
Coord A exon
chr7:27552265-27556251
Coord C2 exon
chr7:27556252-27557649
Length
3987 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTTGTCCTTTGTGCCCACAGGAA
3' ss Score
12.49
Exon sequences
Seq C1 exon
AACACTGAGGTGTACCCCATCCTGAGTTCAGCTCTTCATGACCCACGGTACTTTGAACAACCAGACAGCTTCAATCCTGAGCACTTCCTGGATGCCAATGGGGCACTGAAGACAAATGAAGCTTTCATGCCCTTCTCCACAG
Seq A exon
GTGAGACAGACCTGTGATTCCTTTCCCAGACACTAGAGGGCAGGCCCACCTTGAGACACAAACAGCAATAGGGTCCTGTTCACTGAGTTTCTCCCAGCTGCCTTGCCTGAACCACCCCATTCACCTTGCTACAGCCCTATGAGGGGAGTCTTGAACTAAAGAATCCTGGTCAGGAGGACTTTTTGGAGGAGTATTTAAAAGCCTCTAAACCCAAGAAAATTCATTTTCTTAAGAAGCAGCAGAAGAACAACCAACACCATCTATGCTTGCTTCCATGAACTTGGTTGGGTCTTGACAGCTGAGGAAGCGTTGACTTTATCTGTGAGCAATGGGGAGATGGCACATGTCTTGACACACTAGCCCCTGATTGCATTAAATACTCCTTGGCTTGTTAAATTGCAAAAGAAATCAAAATCATGGCCATCTATTTGAGCAAAGAATCCATTCATAATGGTTAGTATCCTGAACCAGAAAAAAGTTCAGAGTTACAGCAGTCAGTAGTGTTGATCAGAGGTGAGCCATTTGGTTCTGAGCATATGGATATAACCTGACTTATACCAGCTACACTCTTCTCTTAGTTGGCCATATTGTAGTAGTTGGCAGCCTGGGATTGGTTGCTGCTGTGTTTGGCTGTGATTCAGTTATTTGCTAACAGAATAGTTACTTGCACTATAACCTCAATACAGTTTGCAATTCACCACTAATGAAGTTAGGTTAATGTTTTGTTATGTATATGGGCAGCCTTGTGCCAAATTGAATTCATTTTAACAGGGTCTAGCCATGAAAAACTCTATCTAGACAGATTCCTTATCTTTGGAGATAAAGGAGAGTCCAAGAAAGAACTCCTTAGACCTTTTCATTCTGTGGTGATGATTGAACCTAGGGTTTGCAAATGTTAGGTAGGGGCTCTACCACTCAGACACTCCCCCAGCCCCTCACTGAGGGATTCTAGGCAGAGGCTTCACCACTGAGCCACTCCCCCGGACCCAGTCTAGAGTTGAGTGTCTTAGTAAGTTCAGTGACTCAGGGCTCAACTCTACCCTGAAATATCCAATGTATTGGATCTCTCCACTATTTAATCTTTATTCAGTGTGGGGACAAGAAATTGGATAAAAGTGAATGTCTCCATTCCATAGTTGTAAATTTAGAGGGAGACAAGAATGAGATACATAAGGCTAGAGACAGAGAGTAGATGATAGAAAGATAACAAAATTCAAACAGGAGGCACAGGGAGACTAGAACAAGCTGTACTAGTCCACATTATCTGTCAATGTGCAAACATAGAATTACCTGAGAAAAGAGTTTCAATTGAGGACTTGCCTATATTAGCATGATCTGCTCCTTGACTGTTAACTGATATGGAAAGACCTAGCCCATTGTGAGTGGCATTAGTCTTTGTTTGAGGCCCTGAAAAAGAGGCAAGATCGAAACTGAGCTCCATGGAAGTAGGCAGCATGCTCTGGACTGTGGGTGTGGGGGTGGCCAGCTGTCCCAGCTCTTGTTTCTTTGACATCTCTGGCATGACAGTCAGTCTTCTGAAATTGTAAGTCAAAGAGAGGCCCTTCCTCATCCATGTTGATTTTGTTGGGATATTTGTCACAACAACAGAATTAAAAACAGGACACAAGAAGAGGCATTTTAGGAATGATACACAGTGGAGTGGTACGGTAGTAGAAGAGGAATGGAAGGGTGTGATAAGGAGCTACGGGTATAAGAACAGGAGGAGAGGATGATGGAAAATGAAGAGAGAGAGAAACCGAGTAAGAAATAGACTAAAGGGACATAAAGAGGAGTATACTACATGAACACGTGACAAGGAAATAATAGGAGGGGGAAAGAGGGAGAGGAGGGTGAAGAGAGGGAGTGAGGGGGAAGAGAGAGGAAAAGAGAGAGAAGAGAGAAGGGCTCTCAGGTGAGAGGGGAAGAGATGGAGAGAGGGGGAGAGATGGAGAGAGAGGAAGAAAGGGACAGAGGGAAGGGAGATGGGAAGAGAGGGAAAAGAGGGGAAGGGGGAGAGGGAGAAAGAAGGGAAGAGAGAAGATAGGCAGTGGAAAGAGAAGTGAAGAGGTAGAGAAAGAGATGGGAATAGATGAGGAAAAGTAAGAGAGAGAAGATGGGAGAAAAAAGGAAGAAAGGGGAGAGAGGGAGAAGAGGGTGGAGAGAGGGGTGAGAGGGGGATAAAGGGAGAGAGAGGAGAGGGGAAGAAATGGAGAAAGAGGGAAGGGAGAGAGGGAGCGAATGAGTAAAAGGGGAGAGAAGGGAGAGGGAGAAAGAGGGGAAGAGAGAGAGGATAGGCAGGGGAGAGAGAAAAATAATGGTGGGTTTAGACAAAAATAATCAGAAAGGGGGAAAGGTGAAAGAAAAATAATGTCTGGTGGGTAAAAAGATACATGTTGAGTGCCCTGGCCCACAAGAAAAATAAATGAAGCCAAAAAGCATTAGAGCCAAAGAGCCAAGGAAGGTGTCCAAATTGACAGCTCCAGGCCTGGGGACATCGTATTAAGAGTGGGAGAGGGAGGGAGAGACAGACAGACAGACAGAGACAGAGACAGAGACAGAGACAGACAGACAGAGAAAGAGCGACAGAGAGAGAGAGACGAAGAGAGAGAGAGAGGGAGAGAGATGGAGACGGAGAGGGAGAGGGAGGGAGAGGGAGAAGGAGAGGGAGGGGGAGGGGGAGAGAGAGAGTCATTAAGCTGTTCTGGAAAAATCTGGGTCACAAAACTGGTTCTAGGAGAATCATCTCAGAGAGCTACTCCATAAATTTCTAAGCTCATATCACTTAAATTATGGAAAGGACATGCCCAAAGGTATGGGATGCTTTTCCTAAATACTCCCACACAGGCACAATTTCCCAACAACAACCAGCACAGGGGTTGTTGAGAAATGCCTCCTGCACCTAGAGGTCCTGGGGGGTGGGGGAGCAGAGGAGAGTTGCAGATTAAGAATCACTGAGGCGTGGGCAGACTGTGGTGCCTGTGCGCGGGGCTTTTAGGCTCCCATTGCTCCGTGGTTTCCATGCCGGAGGTTACCAACCAGCAAGGGCTCCTCATTCCTCTGAGAACCTGGTGGGTGCCACAGACCCCTTATTACATGTAACCGCCCATTCTCAATCGTCTGAACTATTCAGATAGGAACTTGTTGAAGCTCAGTCGATCTAGGGCTGAGACCAGGAGTGGGCGGGGCAGGGAGATCTAGAAACTTCTTCTACACTTCCACATAAACACACTACACCAATAGGAGCCTTTCTTCCTTTCTTCTTTTCTTTCTTTCTCTTCGCTCTCCTGTGTTCTTTCCCTTTTCTCTTCCTCCCGCTTTCTCTCCTTCTCACTCACTCTTCTTTTATCCCCCTCCTCCCTTTCCCCCTTCCTCTTCCTTCTCCTCCCCTTCCTTCTCTACCTGTAGCTTTTTAAGATTGGGGGTGGGAGGGTGTCGGTGTCAGTCTTGCTCTACAGCCCAGGCAGTTTTGAGGTCATGACCCATCTCTGTCAACTTTCCCACGTGCTAGAATGGCAGGAATCCACCACCACATCTGGTTCATAGGGAGTTTACCAGCCAGGTGTCAGTTTAAGAGCCACTACAAACATTAACTTTGTGCTCACAATAGCTTCATGAGCTGGCTGCTACTGTCCTCATGAGAGAAATTAAAAATCCTAAAGATATCATGTTATAAATGTTCACATCCACCCACCCACCTATCTACCCTCAACTTCAATTTGGTCCTAGCTTCCTCTAGGACAATGGATTCTTTGGAAATCCAACTCTTACTAATGAATGCCAGCCATCCACCAAACATTTTACATGTCTTTTTTTTTGGGGGGGGGGCGGGAGATGGAGGGTTTCTTTATAGTCTCTTAGCATTATGGGTTAAAGGGTAAACTCAAACTTTTCATTGCAATGGCCATGGTTGTCTGGGTTTGGGGATGAGACAGTACAAAGGTTATATACCACTGTGAAGCTCACATGACTTGTCCTTTGTGCCCACAG
Seq C2 exon
GAAAGCGCATTTGTCTTGGAGAAGGCATTGCCCGCAATGAATTGTTCCTTTTCTTCACCACCATCCTCCAGAACTTCTCTTTGGCCAGCCCTGTAGCTCCTGAGAACATTGACCTCATTCCCAATAACAGTGGTGCAACCAAAACACCCCCACAGTACCAGATTCACTTCTTGTCCCGTTGAATGGGCCAAGAGAGGAGAGTCAGTGGACTTCAGGTTCGCATGTGTCCCCATTTCCGTCCCTTGTGAATGGAATGGGAAAACCCAGTGAAGCACCTTTCTTGATGTCTGGACAGAGAGACTTCTGGAGGCCATGGCTTGTTCTGAGTCACCTCTCTCATGCTTGTTAACAGTCATAGTCCCTACTTGCCAGAGCAATCTAGACTCCATGATCAGTGCTAGCGGACTAGAGATGCTCTCTCTTGAGTTGGCTCCATCATGCTCCCACGTGTTGTGTTGGAGGGTCATGTTTGAGAATCCCCTTTATAGATGAGTGACAGGCCACATGATGACATCACACTGCTAGTGAGTAGCGGGGGACAAGATCACACTGTGAGTCTAGAAAAGCACCTCCCCTCCCCTTCCCTACTTGTGCTTAAATTGAGATGAAATTCATAAAATGAAGCTGACAAAATTTTTCAGTTACGTATTCTGAGACAGAGTCTCATGTAGCTCAGACCAACCTCAAAATCCTATATACATCCAAAGATGTCTTGAATTCTGGATCTGTTTTCCACTACTGGCATCATAGGCACATGGACCTACACCCAGATTTTAAACTGACTATATCTTAATGTTTAGATTATAATGTCTTTTAATTTATTCACAATGCTGTATGATTTCACTACCTAATTCCAGGTATTTTGTCACATTTAACCAACACCACCCCAAACCCTGACCTATTAAAAGATCAGTCCCTCGTCCCTCTCTCCATAACCTCCCCCACATCTACCACCTACCCTGCCACACACAGTCTGACTTCTGTGTCAATGGACTGACCTGACTCCATGTGTCTTGTAGAAAAAGCAACAATGTGATCTTTTGTCAGCTGTCCCTGCTTCTCAGGTCCCTGTACTGTGCGGGCCACAGTCACACACCTTCACAGACTTTCCCATTCTCTTTCTTAGACAAGGATCTCCTCAGCCCTCAGGCCCTGAACTGAATGACTCTGCTTAGATTCTCCCACATTCCCCTGTAAGTCCTCCACGGATCTCATAAATACACAAAGCCTTCCTCACCGATCAAGAAAGAACCCTTGCTGTGATTTTGTTTGAGTGTGGGTTGCTTGCTTGTTTGTTGAGACAGGATCTCACTATGTAGACCTGGTTGGTCTTGAGCTCACTAAAACCCATCTGCCTCGACCTCCTGAGTGCTGAGATTAAAGGTTTGTGCTGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066704-Cyp2b19:NM_007814:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: