GgaINT1002366 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFF7]
Coordinates
chr3:108406157-108406864:+
Coord C1 exon
chr3:108406157-108406298
Coord A exon
chr3:108406299-108406575
Coord C2 exon
chr3:108406576-108406864
Length
277 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CATTCTGCATTTCATTGCAGGGC
3' ss Score
8.56
Exon sequences
Seq C1 exon
GGAACCTATATCATCCCCTTGCTCAACTCTGTCCTGCAAGACAAAACCCAGTGGGAGAAACCATGCTCCTTCCACCCTGAGCATTTCCTCAACTCAGAGGGGAAGTTTGTAAAGAAAGATGCTTTCATACCTTTTTCAGCAG
Seq A exon
GTATGTTCTATTCTGCTCTTTGGGCTCTGAGGGGAACTGGGCATCTGGGATTCCTTCTTTTTCACTGAACCTGATATTTCAGACTTTTCCCAGATGTTACCTCTCCTTTTCTCTCCACCTACATCTGCTAACTTGAATAGCCTAGCTTTACCCATGGACTTGAATTCTGAATTCATTCTCCTACAGCTTAAAGCCCCTCACAACTGGAAAAAAAAAAAAAAAAAAAAAAAAAACAGCTCCCATTGACTCTTATGGACCATTCTGCATTTCATTGCAG
Seq C2 exon
GGCGGAGGATCTGTGCTGGTGAGACTCTTGCCAAAATGGAACTCTTCCTCTTCTTCACCAGCCTCCTGCAGAGGTTCACCTTCCAGCCTCCTCCTGGAATTTCCTCCTCAGACCTGGATCTCTCTGCCCCCCCTAGGTTTGTCATTGCCCCAGTAACTCATGAGGTCTGTGCAGTGTCACGTTCCTAGGGGCTTTTATCAGCTGCCTCCTTTTCCTGGAACGCTCAGATGAAATATCTGAGTTCACCTCTATTCCTACCAGGGAAGTTTGGTACTTCTGAATCTAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690:ENSGALT00000026937:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.5=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCACCCTGAGCATTTCC
R:
GAGCGTTCCAGGAAAAGGAGG
Band lengths:
300-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]