RnoINT0044385 @ rn6
Intron Retention
Gene
ENSRNOG00000020827 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:RGD Symbol;Acc:2477]
Coordinates
chr1:83636249-83637780:+
Coord C1 exon
chr1:83636249-83636390
Coord A exon
chr1:83636391-83637598
Coord C2 exon
chr1:83637599-83637780
Length
1208 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
TCCGTCGATTGTGTCTACAGGAA
3' ss Score
8.74
Exon sequences
Seq C1 exon
GGTACAGATGTGTATCCCCTGATTGGCTCAGTCCTCAAAGATCCCAAATACTTCCGCTACCCAGAAGCTTTTTATCCTCAGCACTTCCTGGATGAACAAGGGCGCTTCAAGAAGAATGATGCCTTTGTGGCCTTTTCCTCTG
Seq A exon
GTAGGTAATTATGCCAGATAAGTACTAGAATTTTCCCCAGATAAGTACTAGAATAGTCTTTCCAAGGCCTACATTGTAGAATTATAAAAATCCTAAAATTCCAGATCAGGGAATATTTGAATTATTCACTTTGATGATTAGAAAAATCTTGTTGTCTATGACTGTGATCTCAGTATTCAAATAGCAGTGGTATTAAGTTTTCAGAAGAAAGGCTAGCCTGGGCTAACAGTGAGATCTTGACTTTAAAACAATTGGAAATAACAAAAATAATAATAATAGTAACTGTTAGAGCAACAATACCAAACATTTAGTAAACCTAACCATAGTATGTTAAGAATCAAATTAAAAATATTTCATGCTTAGCCATATGACCCTTGTCTGAACCAGTTGTGTCTGCCATGTGCTAAAAAGACGTGGCCACAAGTAACACTTAAGTGAGTGGTTCTGTATGTGTGAAAATGTAAACATTCTTATTCAAGGGCACGTGAAATTCATTTAACTTGCACGTGACACTCTTTTTCTCTGAATATTTTCAAACATTCTAAAGGATGAAAAGCATTCATACCACACAGACACAAAGCAACACATGGATTCACCTCACAAAGCTGAGGGGGCCAGCGAGTGGTCTTGGCATCTTGGGATGCCTGGGGCCTGGGTGAATCGCTGCACCTCTCAACCATGAGATAGAGATTGATCGCCTTCCCACTGTTGAAACGGCTCCTGGCAGTTGGGAAGGTATCCTTAAATACAATTCTCAGCTTTTTCTTTTTAATCTAACTAGTATTTGATGTCTAAGGCATTTGAAACATCTTTGAGGAATTGAAGTGAACAGAGTTTTGATTTTTTTTTCCCTGATTTGGGATGGAATTCACACACTTGGAGCAAATGCTCTCACTGAGACACATACCCCAGCCTCTCACTGGTGGGATTCAGTCAACACTCTGCTTCGATTCCCACTCAGCCCCCATGGATCCTTCGGAACCTGTCTATCTGGTTCTAACCCAGGGAGACTAGGTCGGCAAAAAAGTAGCTGCCACCTGCCCAGTCCCTCTAGGTGGCAGGTAGCAGTGGGACCCCAGTAAGTCTTAATAATGACCCCACATGGTAGATAGAGCTGTGGGCTGAGATACTGAGGAGTTCATCGAGGTTGCGTGGGATGGTTATGGTAGGGACATGGCGCACACCGCCTCCGTCGATTGTGTCTACAG
Seq C2 exon
GAAAGCGCATCTGTGTCGGGGAGGCCCTGGCCCGTATGGAGCTCTTCCTCTACTTCACCTCCATCCTTCAGAGGTTCTCCTTACGTTCTCTGGTGCCTCCTGCTGATATCGACATCGCTCACAAAATCTCAGGCTTTGGCAACATTCCCCCAACATATGAGCTCTGCTTCATGGCCCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020827:ENSRNOT00000028261:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACAGATGTGTATCCCCTGA
R:
GGCCATGAAGCAGAGCTCATA
Band lengths:
318-1526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]