HsaINT1002069 @ hg38
Intron Retention
Gene
ENSG00000269353 | AC092071.1
Description
NA
Coordinates
chr19:40946347-40947450:+
Coord C1 exon
chr19:40946347-40946545
Coord A exon
chr19:40946546-40947100
Coord C2 exon
chr19:40947101-40947450
Length
555 bp
Sequences
Splice sites
5' ss Seq
AGGGTTTCA
5' ss Score
-9.95
3' ss Seq
AGATAGAGATGGGGAGACAGTGG
3' ss Score
-14.24
Exon sequences
Seq C1 exon
TTTTTTTTTTTTTTTCCTTTTTTGAGACACCGTCTCGTTCTATCACCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAAGCTCTGCTTCCTGGGTTCATGCCATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGAGTATAGGCACCTGCCACCATGCCCGGCTAATTTTTTGTGTTTTTTAGTAGAGACAGG
Seq A exon
GTTTCACCGTGTTAGCCAGAATAGTCTTGATCTCCTGATCTCGCGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGAATTACAGGCGTGAGCCACCATGCCTGAGACATTATCTTAAGGTTTCTTTTTTTTTTTTTCTTCAGACAGGGTCTTGCTCTGTTGCCCTGGCTGGAGTGCAGTGTCATGATCTCAGGTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAGGTACCTGGGACTACAGGTGTGTACCACCATGCCTGGCTAATTTTTTGTGTTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCCTGATCTTCTGACCTGGTGATATTCCTTCCTCAGTCTCTCAAAGTGCTGGGATTACAAGCGTGAGCCATTGTGACAGGCCTGCTATTTTGTTTTAAGAGAGGCAGAGATGTAGGGAAATAAGGACAGAGACAGATAAGTAACAAAGATAATAAGATTGAGAAACATAGTTGGGGACAAAGAGGGAACACACTGAGAGATAGAGATGGGGAGACAG
Seq C2 exon
TGGCAGAAGGACAGACAGCAGGTGAACATCAGGCAGTATACGGAGAGGAAGAGAGAGAGACACACACAGAGAGAGCCACATAAGGAGAAGAGGAGGAGGAGGAATAAGAGGAGAGGGAGGAGGAAAAGGAAGGCGGAGGGGAGAAGGAAGGAGGGAAAGGAGAGAAACAGAATAAGAGATAGGAAAAAGAGAGAGTGACACAAGAAGAGAGGAAGAAAGAATGAAGGAGACAAATAAGGTATCTTTAGAGGGAGATGAAAAGAAAGAAGGAGAGAGAGAGAGATTGGGGAGCAATCAGATTCAAATAGATGGAGATAGGAGGTTAAGCAAGATGGAAGAAAGCCAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000269353:ENST00000597260:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGGAGTATAGGCACCTG
R:
TGCTCCCCAATCTCTCTCTCT
Band lengths:
358-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains