BtaINT0004529 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44287007-44289527:+
Coord C1 exon
chr22:44287007-44287203
Coord A exon
chr22:44287204-44289375
Coord C2 exon
chr22:44289376-44289527
Length
2172 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
AAATTTATGTTCTCTTATAGTTG
3' ss Score
7.49
Exon sequences
Seq C1 exon
ACCAACAGGCTTGCTTTATATTTTCTTTAATTTGGTCCATTGGAGGAAGCTGTGATACAGATGGTCGCATTGTTTTTGATGTTTACATACGAATAGTCTTAATGGGAAAAGATGAAAACAACCCAATACCTGATTCTGTGGGTAAATGGGAATGCAACTTTGATGAAAAAGGCCTAGTCTATGACTACATGTATGAG
Seq A exon
GTATGATGTAAGATGCTTGTTATGATAAACCATAGAACACAAAGTCTTAGATCAGTGGTCAAAACTGGGTTCCCATCCTAGAGTTCTCTGACTCCTGTGGTTAGCTTTTAGTCCCTTCTCTTTCGTTTCTCCTCCTATAACTTCTTCCCCAGTGGCTTCCCCAGTGGCTCAGAGAGTAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTCAATTCCTGGGGTTGGGAAAATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTACCTAGAAAATCCCATGGACAGAGGAGCCTGTAGGGCTCCTGTAGCGGGCTACAGTTACATGGGGTTGTAAAGAGTTGGACACGACTGAGCAACTAACACACCAACTGATAACTCGTGGACAGTATAGATCCACTTGTTTGAAGAATATTTTATAATTTCAGATTTATGTTAAATCTGTTTTCTCTAATTTAAAAAAGAATTCACAAAAATATCCTTTTAAACAGCAAGCATTTACATAATCATTGATTCATGCAGATTTTACTTCACAAAGCCATAAGGTCTGGATAGAGCCTTATTACAATTTTACCTGAATCTCAAAGTCTGTAGATGAAAAAGCAAACCTAGAAAGGCTACTGGCTAGCACAGCCAGGACTTGAACCCAATTCTCCTGATTGCCAGTGTAGAAAGGTCTCTCTAAAACCCTGCTAACACAGAATTTTAAGAATAAGACCAAAAGGATAGTTTCATTCACATTAGTCACACTGAGAAGTCAATAAAATATCGCCTGAAACTGAAAAATCAAGAGATGATAACCCAAGCATATTCTTTAACAGTTGAAGGTAAAAAAAGAAAAATAGAGTTGAAGGTAAATATCAAAATATCTAGCTGAAAGAGGCAAAGGTAAGTTGCTGTTGGAGAGGAGAAAATGAGTGGGAAACTGATCTTTTTCCTTACCTTATAAACTTGGGCTCTAAAATATGTACACATATAGCTTTGATAAAAATAAAAGATAAAACCTCAGAAATTAAGAACATGAATTACTAAAGAATCATTTACCCAAATTTGCAAAATTACCATAATCCAGACACAAACCATATACATATACAATTTGTTAGAAAATATTAAAAAATTCTTAGATGCTCGCCATAGCCCTGGAGTGGGCCCAAGAGATCTCCTTCTTTGCCAGGTGTTAACTCTTTTGTTGCTTGATGAAGGTGAAAAGTCAGTAAGAGACATTTAGGATCTCCAGGGAAGTGCAGGACAACCTGGAGAGGAGGGGAGGGTGGATTCCCTAATCAGGATCACTCAGGGTGTTAAGACAGCAGATCTTCATTCAACCCATGGTTCAGAAGAAGTTCAATAATGTGTCAATCGGTTCCGCCTTTCTAATATGTCCTGGTTGAATATCAGCCTGGATCAATATGCCAAACAGAATAATTTTAGAGAAACAAATATAATGAGTTTATTTTATATTTTGTTTCTCTTGAGATTATTGCCCATTTCCTTTAAAATATGAAAACAGTATGGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGGGAACACATGTATACCTGTGGCGGATCCATTTCGATATTTGGCAAAACTAATACAATATTGTAAAGTTTAAAAATAAAATAAAATTAAAAAAAAAGAATCACTAACTTTTAACTTTAATTAAATAAAATGTTATTCTCCACAAAACAAAACAAAAAAAAATAAATAAAATATGAAAACATCAAGCCAAAGTCCTATTAATTGTAACTTCAGCCACATCAGAGTGGCTCCCAAATAAATTCTTGATATATGCACAAGGACATCTTCAAGGCATTTTGCAAAAATTAGAGTGTTAAGAGGACATAGAGGCAAAAATATCTGAAATTTTATATATGTTGAATTTGTGATAACTAGGTTTCATTAAGTTCATCAGGTTACCGTTGAAAAGCAAAACTAAAACTAAATGCGTTATTTCTTACATTGGATGGTGGATTCATGGGTGCTTGTCAGTCAGAATTAAATACATTGTATACATTATTTTGGATGAATCTAGTATTTCACAACAAAAAGGAGGAAAAGACTAAATACAGTTTTAAAAAGCATATATGATTGCTATGTTAAAAACAGCCTGTTAGATAGCAAGTGCATGGTTATAATGTTTTAAAATTTATGTTCTCTTATAG
Seq C2 exon
TTGAAAAACCGAGGTCGCTGGATCCACTGGAATGAACTAATTAAAAGTACTAGTTTAGGAAATAGACGTGTCAAGATTCAAGATATCATAGTCCCTACCATGGATACAATTAGATATACATTTCTAATGGATTTGAGTATTACCTATGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802:ENSBTAT00000013592:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(11.1=58.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]