GgaINT0021591 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:8919745-8920565:-
Coord C1 exon
chr12:8920368-8920565
Coord A exon
chr12:8919897-8920367
Coord C2 exon
chr12:8919745-8919896
Length
471 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
TGCATCTGTGTTTTTCCAAGATG
3' ss Score
6.89
Exon sequences
Seq C1 exon
CCCTTGCAGGGTTCCTTTGCTTTTGCCACAGTCTGGTCCATTGGTGGCACTTGTGATAGTGACAGCAGAATCATTTTTGATACTTTCTTGAGGGAAACTTTGGCTGGCAAATCTGGAACAAGTCCAGTACCAAAGGTCGTGGGAAAATGGGAGTGTCCCTTTGAAGAGAAAGGTTTGGTGTATGACTATGTGTATGAG
Seq A exon
GTATGATTTCTTGCTTCTACATTGATTGAACATTTGTACAGTCTGAGTGGAATGAAAATAGCGCTGGGTGTGGATATTTCAACTTCACATAGTTTGTTAGATGTTATAGAGCATTAGTGTTGAATCAGATCCCACAGTGCATACTTCATTTATTATTCTTTTTAAAATACTAAGTTCTGACCAATTTGTTTTTAGAAAATACCGAGCTGTGCATATCAAGTATGATTCTTTTCTAACTAAAGCTGAGCTGATAGACTCAAGTTTGGTTTTCTACATACGAAAGAACTTCCTAGAAGGAAAAAAGGATATTGAGCCCATAGGCAATTTACTACAGTTCTGTTTTGTATCCTTTGAAAATACTCAAAGAGCAAGTACTTGCTCTTTTGAAGTTAAGCTTATGTTCTTTTGTATGGTTGGTTGATTGGATTTTTTTTTGTTGCTTTTTTGTTTTTGCATCTGTGTTTTTCCAAG
Seq C2 exon
ATGAAAGGGAGAGGACGTTGGGTTCATTGGAATGGGTTTATTAAAAATGTTGATTACAGTGGTAAAAATGTGAAGATTCAAGATATCATCGTCCCAACTATGGATACAGTCCGATATACCTATTTGATGGAACTGTTTGTTACCCATGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601:ENSGALT00000008986:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(11.4=60.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCAGGGTTCCTTTGCTT
R:
TCCATGGGTAACAAACAGTTCCA
Band lengths:
347-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]