GgaINT0021591 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8671713-8672533:-
Coord C1 exon
chr12:8672336-8672533
Coord A exon
chr12:8671865-8672335
Coord C2 exon
chr12:8671713-8671864
Length
471 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
TGCATCTGTGTTTTTCCAAGATG
3' ss Score
6.89
Exon sequences
Seq C1 exon
CCCTTGCAGGGTTCCTTTGCTTTTGCCACAGTCTGGTCCATTGGTGGCACTTGTGATAGTGACAGCAGAATCATTTTTGATACTTTCTTGAGGGAAACTTTGGCTGGCAAATCTGGAACAAGTCCAGTACCAAAGGTCGTGGGAAAATGGGAGTGTCCCTTTGAAGAGAAAGGTTTGGTGTATGACTATGTGTATGAG
Seq A exon
GTATGATTTCTTGCTTCTACATTGATTGAACATTTGTACAGTCTGAGTGGAATGAAAATAGCGCTGGGTGTGGATATTTCAACTTCACATAGTTTGTTAGATGTTATAGAGCATTAGTGTTGAATCAGATCCCACAGTGCATACTTCATTTATTATTCTTTTTAAAATACTAAGTTCTGACCAATTTGTTTTTAGAAAATACCGAGCTGTGCATATCAAGTATGATTCTTTTCTAACTAAAGCTGAGCTGATAGACTCAAGTTTGGTTTTCTACATACGAAAGAACTTCCTAGAAGGAAAAAAGGATATTGAGCCCATAGGCAATTTACTACAGTTCTGTTTTGTATCCTTTGAAAATACTCAAAGAGCAAGTACTTGCTCTTTTGAAGTTAAGCTTATGTTCTTTTGTATGGTTGGTTGATTGGATTTTTTTTTGTTGCTTTTTTGTTTTTGCATCTGTGTTTTTCCAAG
Seq C2 exon
ATGAAAGGGAGAGGACGTTGGGTTCATTGGAATGGGTTTATTAAAAATGTTGATTACAGTGGTAAAAATGTGAAGATTCAAGATATCATCGTCCCAACTATGGATACAGTCCGATATACCTATTTGATGGAACTGTTTGTTACCCATGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601:ENSGALT00000008986:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(11.4=60.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCAGGGTTCCTTTGCTT
R:
TCCATGGGTAACAAACAGTTCCA
Band lengths:
347-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]