BtaINT0004554 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44345880-44347706:+
Coord C1 exon
chr22:44345880-44346052
Coord A exon
chr22:44346053-44347565
Coord C2 exon
chr22:44347566-44347706
Length
1513 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TCTTTTTTTTAACCTTTCAGTAA
3' ss Score
8.37
Exon sequences
Seq C1 exon
ATTGCAGAAAAAACAGAACTCAAAATAGCAGAGTCTCGAGAAGGTTATAGACCTATTGCTAAACATTCATCAGTGTTATTCTTTAGCATTGCAGACCTGGCTAACATCGATCCCATGTACCAGTACTCTCTCATCTGGTTTGTGAACCTTTATATCAACTCTATTCATGACAG
Seq A exon
GTAAACATTCTCTAGCATCATTCATTCTCCCCAGGTTGTATTTTCACCATCCTTTCTATTTAAAATATATAGCTTTTCTTATTATTTATATATAATACATATTCATTATTGATGATTACAAAATATGGGAAAGTGAAGGAATGAAGGAAGAAGTGAAGGAATGAAGGAAGAAGTGAAGGAAGGAAGGATGGGAAAGAAGGGAGGAAGAAAGGGAGGAAGGGAGGGAGCAAGGAAGGAAAGGAAGAAGGAGAAAGCAAGCAAGCAGACCTCTCTTCTATTCTGTTTTATTTCACTCCTACTCAAGATTTAAGCATAGAGGGATTAGCTTTAGTCCTTTCCCCACCTTTCTTTTAAATATTTTGCTAAGGCAATAACCTATCTTTGCTAGCAACTCCAGTTTATCTTCCTCCAGCCTTGAGGTCCCTAAGTTTCAGCTCCACATTTCTAATCATTTGCTAGATGTTTTCACTTTAATCAATTAATGAATGTACACAGATCTTGGAATTAGACTGGAGTAAGGGATTAAATTTCAGTTCTTCCAAGGGAGTAAATTTCAGTTTAACTGAAGTTTAATTTCAATTAAATAGCTACATGAATATAGGCAAGACAGTTAACTTTTCTGTAATTGCCTCAATTTTCCTTATCTGTAAAATAGGGATAATAATAGTACCTACCTTTAAGAGTTCTTTTGAGAATTAAAAGATAATATTTGTAAAGTATTTTTAACAATGTCTGGTATTAAGTAACTTGTTAAGTAGGAAAAAAATATGATTTGAGCCTAGCATATGTGTTCTACATGGGCTCTTGGTGGAACAGTCTTTCCTGAGTGATTGAAATCCCTAAGCTTTCCCAGCTGGGATTTGGAATTTGAATTAACTCACCGTACATGATGGAGGATATTCAAGCTGAAGAATTGACATAAATGTCAATAGCAAGTCGACGAGGATGTGAATGGAACCCTCGTAATATAGTGCATCCACTTTGGAAACACTTTTAGAAGTGTATATATCTGAATTACTGTGCTGTACTTCAACTATACTTCAGTTAGGAAAACAATAATGCTGTAGTAAACATAGGGGTACACATATCTTTTGAGTTTGTGTTTTTTGGAGTTTTTTAGGGGTAAATACTCAGAAGTGGAATTGCTGGATTGTATGGTAGTTTTATTTTTAATTTTTTTGAGAAACCTCTGTGCTGTTTTTCATGATGGCTGTATCAATTTACATTTCCACCAATAGTGCACGCGGGTTCCCTTCCAACGATAGCTTCTTCTGTAACTATATACAGTATCACAACCAGAAAATTTATATTGGTACAATCCAGAGAGCTTATTCAGATTTCACCATTTTTTAATATGCACTCATGTGTATGTGTGTGTATGTGTGTGTGTGTAGTTTCATGTTTTTAACAGTGGTTATTTTGATAAAATAAAATGTGTATGTTAATTCATGTGTAACTTATTTTTTCTTAGATTTACTTGACTCAATATATTTTCTTTTTTTTAACCTTTCAG
Seq C2 exon
TAACAAATCCAAAATTTTGGAAAAGCGCCTAAGATATTTAAATGACCACTTTACATACAACTTATATTGTAATATATGCCGGTCACTGTTCGAGAAGGACAAGCTATTGTTTTCCTTTTTATTGTGTGCCAACCTCCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802:ENSBTAT00000013592:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAACTCAAAATAGCAGAGTCTCG
R:
AAAAGGAGGTTGGCACACAAT
Band lengths:
302-1815
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]