GgaINT0021614 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:8897804-8898593:-
Coord C1 exon
chr12:8898421-8898593
Coord A exon
chr12:8897945-8898420
Coord C2 exon
chr12:8897804-8897944
Length
476 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTTCATTGTTTTCTTTTTAGTAA
3' ss Score
8.5
Exon sequences
Seq C1 exon
ATTGCAGAGAAAACAGAACTGAAAATAGCTCAGTCTCGAGAAGGCTATCGACCTATTGCAAAGCATTCCTCCGTGCTGTTCTTCAGCATTGCAGACTTGGCAAACATTGACCCCATGTACCAGTACTCCCTTAGCTGGTTTGTTAATCTCTTCATCAACTCTATTCATGACAG
Seq A exon
GTAAATACAGTATTTCTTGTGTAAAATTAAGTTTTCTTTCTCTTAGAAACAATTCCCTCAGTTTTTAAACCATTTACCTCTTGGCCCTCCTTGAATGTGGGGTTTTGAAAGTAAATGTGATATGTTAATAAAATAAACACTCTCTTTAGTTACTGTTTGAGCAAATCATGAACTGTAGGTGTACATTGGAGAGCTGAAGTATTTTTAAGAATGTTACTTTTAGGAAAGTTGTTCCCTATGAATGCTGCGAGGGTGCTGCCACCTAACTGTAGCAAATGAAGTTGCTTGGAACTTTCAAGACAACTGTAAAACATCATGTCTAATTGAAATTTGGGGGAAATCAACACAGAAGTCCCTTGTGGAGTGTGTGGGCGCATCATAATTCCTTCATGGCCTTAAATATATTCAGATTTCTTCATTGATTTGCTTTAGTTATTAAATCTGAAGTCTCCGTTTTTTCATTGTTTTCTTTTTAG
Seq C2 exon
TAACAAATCAAAAGTTTTGGAGAAGCGACTTCGATATCTGACTGACCACTTCACATACAACTTGTTCTGCAATGTGTGCCGCTCACTGTTTGAAAAGGACAAGCTGCTCTTTTCCTTTTTGCTATGCTGTAATCTTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601:ENSGALT00000008986:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGAGAAAACAGAACTGAAA
R:
AGAAGATTACAGCATAGCAAAAAGGA
Band lengths:
310-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]