DreINT0058090 @ danRer10
Intron Retention
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19591902-19592306:-
Coord C1 exon
chr23:19592134-19592306
Coord A exon
chr23:19592043-19592133
Coord C2 exon
chr23:19591902-19592042
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CATTTACATGCCTTTCACAGCAA
3' ss Score
5.95
Exon sequences
Seq C1 exon
ATCGCAGAGAAGACTGAGATTGAAATAGCCGAGTCGAGGGAGGGCTACAGAGCCATCGCCAAACACTCCTCCATCCTCTTCTTTACTATCGCAGACCTGGCCAACATCGACCCCATGTATCAATACTCTCTCAACTGGTTTGTCAACCTCTACGTCAACTCCATTCTTGACAG
Seq A exon
GTGGGGAATAACTGCTCAAGAGTTTACAATTAACTTTTTTTTTTTTTGTTGAATTTTTCCTTGCATTTACTCATTTACATGCCTTTCACAG
Seq C2 exon
CAACAAATCAAAGAATCTAGAGAAAAGACTCCGATACCTGATTGATTATTTCACCTATAACCTCTACTGCAACGTGTGCCGTTCGCTCTTCGAGAAGGACAAACTCCTCTTCTCGTTCCTGCTCTGTTCTAACCTACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987:ENSDART00000134012:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTATCGCAGACCTGGCCAA
R:
CACACGTTGCAGTAGAGGTTA
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]