BtaINT0004569 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44375145-44376594:+
Coord C1 exon
chr22:44375145-44375212
Coord A exon
chr22:44375213-44376367
Coord C2 exon
chr22:44376368-44376594
Length
1155 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAT
5' ss Score
4.44
3' ss Seq
TGTATTTCCTTTTTTTCAAGCTA
3' ss Score
6.98
Exon sequences
Seq C1 exon
TGGATTGCTTGCTGAACAGTACCCCAAACTTCTGTTTGACCTGATGCCCATCATATGGATAAAACCAA
Seq A exon
GTAAATGTATTTCTAACAAAACTTTGTAGAGTTGTATGGAGCATAATGATAGATATTTTTAACTGCTTTCCAAATAAGTCTCTGCTCAGACCTATTAGAATTTGTTCAATTATAGTAAATATTGATTTAATGTTTATATTGGAAATACATTATTCTCCCTTTTTGTGTTGCATTTTTATTATTTTATGACTATTATTTCGCCCCTTTTTGCTCTTATCACATGGGATATAACATTTTCTTTGCCCCTCCCCTTCACTTCTCCTTTTTCCAAGTCTAGAGCTTCCCATCAATATTTTGATCCTGAAGTGCCTTTGTACACATCTTAGAGACACAAACAGGTTTGACACATAGTCTCCAGTTATTGACTAGAGTCTTCTGGCTATAAGAAACTCCTAGGCCTAGGAACCAGCCAGGTGACCCAAGCCACTAGGCGTGGAGACCAGCTTTGCCCCCTTTAAAACCTACTTGCTTCTTCCTTTTTGCCATCATCATTTTCCCACCAAATGTGAACAATTGAGGCTCATTCTTTTGTCCTTCCTCTCTATTTTTTTAAAATTTTCAAATAACTGTAAATGAAAACATTTACAAATCACCCAATTACCACTCAACCTATTAAGTGTTTTTATTTCTAAAGCAGTTCATTTTATAACTATGATGAGGCCTCAGTTTAGAAAGATTTCTAATATCTCATATCTGGCTTTGCAAGGATTATGTAGAGATTCTTTTTGTGAGTTAGTGTATATTTCTGAATAATAACCTAGTGAAAACCAATAGTAACTTCAATTTCTTCTAATTTATGGATTTCTTATATTAGACCTCTAAGCAACTGTGTTTCTATTTTTGCATCTCCCCCATTACCTATGCTGTGTTTTGTTTCTCCTTCTTATCTCCTAAGTCCTCTTGAGTGATCAAGAGGACTAAGTGATCAGGTCTTTAAAATCACGTACCATATTGAAATCACTTACGTTGTTTCATAACCATAATTATATGCCAACTATGAAAAAAGAAAAGCCAAAACAACTTTAAAATATTCAAATATCATAATCATGATCTGAGATTTAGTAGTGGTCATTTTATTACAAGATAAATAGTTGTTCTTTTAGTAGCAGTGACTGTTTTTCCTTTATCAAATGACTGTATTTCCTTTTTTTCAAG
Seq C2 exon
CTATAAAGTCTAAGATCGTGAAGTCGAATGCCTATGTCTGTCCTCTTTACAAGACAAGTGAACGTAAAGGAACTCTTTCCACCACAGGACATTCTACTAACTTTGTCATTGCAATGTTGTTAAAAACAGACCAACCTACTCAACACTGGATCAAACGTGGGGTTGCTTTGCTTTGTCAATTAGACGACTAAATTGGACAACTTCATAAAACATCTGAAAGAAGTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802:ENSBTAT00000013592:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(3.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(8.3=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTGCTTGCTGAACAGTACC
R:
TTCAGATGTTTTATGAAGTTGTCCA
Band lengths:
286-1441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]