GgaINT0021628 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8637492-8639466:-
Coord C1 exon
chr12:8639399-8639466
Coord A exon
chr12:8638404-8639398
Coord C2 exon
chr12:8637492-8638403
Length
995 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTTTTTTTTTCTTTGAAGCTG
3' ss Score
10.11
Exon sequences
Seq C1 exon
GGGAATATTAGCTGAGCAGTATCCCAAATTACTCTTTGATATGATGCCAATCATCTGGATAAAGCCAA
Seq A exon
GTAAGTATAATTATTCTGAAGTATGTGCTATTCAACCAGAAATTTAAACAGTGAATTACTTTGTTACTGAAGACCAATGCTTCCATCCTCACCGAAGTACCCAGATGTACACTGAATTCATGTGCACCTGACCTTTGTCTCTAATGTAAAAAATTGTGCTTGCTATGTTGACTCATTCAGTCTCATCTCACTCACGCAGTCAGCCTGTCCATCTCTTTGCAGGTGTTTGTCGTTGTGTAATTGACCAATTGCCTGGTTACATTAACTATTGTAAATACGTGTAGTTGCTGCCCAGTCTATTTCATAACAAAATTACAATTTTGGTAGGAAAACTAAATGGTCTTTGAATTTCTGCCTCTTCTCAAGTTGAGGAGACACTTCAGCAAAACTTTGTTGCAGCTGTTGCAACTTAGCTCTAAGTAGGTAATAGGCAGTTATACAAAGCTTCCACCTTTTCTGCCTGTACATTCCATTGGATGGATCTGTTCTCAGACATACAAGATTTTTTTGCAAACTGCATGTAAACAGTCTAGGTATACAAGAATCCCTGAATCTCCAGTGACAAGAAACACTGAATCTCCAGTATTGCAGTTATGTCCTGTAGCTGCAGGACCAGAATTCTTATTGAAATACTGAAAGTTTGTGTCTCAGCTGTAATCCCAACGTGAAAGCAGAATACTTTGTTTGTGCAGATCTTCTGATTTGTATGTGGTTTTGAATAATTACAGAGTTGGTAGAATCACAGAAAAACATTGATTCTTGAAAACAAATTGTAATTAAGTTAGTTTTTTGTTTCTTCTTAAGGAAGAAGTAATCAAAACGAAAACAACAAAAAAGCTAAATGTTATGGGGCACACAGAACAATTTTGCAATCTTTATTAAGTGTGAAGGATATTGCTATAAGTACTTAAAATCTTCATGTAGATTATGTCCCTATCAGTACATCTGCTGTACACGATATATTGCTGTCTTCTTTTTTTTTTTTTTCTTTGAAG
Seq C2 exon
CTGCAAAATTGGATATAAAGAAATCTAACGCGTATGTTTGCCCACTCTACAAGACCAGCGAGCGTAAAGGAGTCTTATCTACCACTGGGCATTCTACTAACTTTGTCATTGCTTTGACACTTAATACGGATCAGCCAGTCCAACACTGGATCAAGCGAGGTGTTGCGTTGCTCTGCCAGCTGGATGACTGACCCTGGTGGTTCAGATACAAATGTCACAGGAGACTTTTCGCTTTATTTGCTTACAGAAGAAGTGCAGCATGCTCTATACAGGCAACTTCTGTAACTGTGGGGTTTGTTTGCTTTTTTTGTGATCTTAAAGGAGGGCATGTTTCTGATCCCCCAGTATTTTGCCTTCCATAAGTATATGTTATTATTAGCATCTTTACAATCTACAGAAGAGGCAGGTAGGACTTTAGCCTTTGATAACATTCTTAATGTGTAAACAACAATTCTATGCATTGCTCAGATATTAGAAAATATATCTTAATGAAAAGCAAAAATTGTCTGCACTTTCTTTGCGATACATTCCAATTAATAAACTTGAAGCATGAAGAGTGCTGAATCATGTGAGTGGAAACCCAGCAGACATGAAGTCTGGGGACTTTTGTCCATGTTACACACAGCCTATGTTCCATCACAGCAACAGCAAAAATCACACCACAAGAAATTGTTGAACTATCTGTAATAGGCACTTCCATGTCCCTTCATTGCTCAACAAATCCATCTTTTCAAGCTACAGTTCAGATTTTTTGATTTGCTATTTTTTTCTTTTCTAAATTGTTTCCATTAAAGAGAAATGATCAAAATCTCCCTCATTACCACTTGCCTGAAATGTCGTTTCTGTTTTTTGTTGCTCCAGAGAGGCACTCCAGTTTCAGTTCCTTCAAGGATTCTGCAATTTAGTTTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601:ENSGALT00000008986:76
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(3.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(8.3=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATATTAGCTGAGCAGTATCCC
R:
TGCCTGTATAGAGCATGCTGC
Band lengths:
343-1338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]