DreINT0058105 @ danRer10
Intron Retention
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19579680-19580575:-
Coord C1 exon
chr23:19580508-19580575
Coord A exon
chr23:19579948-19580507
Coord C2 exon
chr23:19579680-19579947
Length
560 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGA
5' ss Score
5.39
3' ss Seq
GTCACAAATTCTGTCTTCAGCGG
3' ss Score
6.64
Exon sequences
Seq C1 exon
TGGAGTGTTGGCCGAACAGTATCCCAAAGTTTTATTTGATGCAGTCCCCATCATTTGGATCAAACCAA
Seq A exon
GTACGATCATCTCCGCATATATAAGTACACCGCTCACAAATCTATCTTTTAAATTTATATTTTTAATAAGAAGCTATACAATATTATATTTATATTTATATACAATATTATGCATTAGTTTAGTCAGTAATGAAGCCAAATCTGGAGCTTATCTAACAAAATAACTTACGATAACGGTCCAAAAACTAGAGCACTCACATTTATGTTATAAAAAAAATATTAAATACAAATTTAAAGAAGAGGAAAAATCAAGAGAGACAAAAAAAGTAAACATTTTGTTAAAATTTTGTAGGTTGTATTGTATTTTTTTATGTTTGGTGACTAAAATATTAATTTAATAAATATATCTGTTTGATAAATCTGTTTTGTTTAAATGCATCAAATTGCATTGCCTATATTCAATAAGAAATGGATAAAAATATAATTTTTTCAAAATGGGGTGTACTCAATTATGCTGAGCACTGTATATACTGATTAATTACATTCCCATGAAATATTTCATTCTTTTGTATACGCTTAAATGTCACAAATCTCATAAATGTCACAAATTCTGTCTTCAG
Seq C2 exon
CGGACAAGAAGGCCATGGACCAGCCCCATAGTGTCTATGTGTGTCCCCTCTACAAGACCAGTGAGCGTAAAGGTACACTGTCCACCACTGGCCATTCAACCAACTTTGTGATCACCATGATGCTTCCTACTAGCAAACGTCCTCAGCACTGGATCAAGAGAGGCGTAGCTTTGCTGTGTCAGCTGGATGATTGACCACAAACACTTTATTTACTGTTCTCACACATGTGGATATACAAATGTATCTATTAAAAATAATATCTCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987:ENSDART00000134012:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(3.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(8.4=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGTTGGCCGAACAGTA
R:
ATGTGTGAGAACAGTAAATAAAGTGT
Band lengths:
294-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]