BtaINT0004644 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MZI3]
Coordinates
chr1:153797290-153799326:-
Coord C1 exon
chr1:153799110-153799326
Coord A exon
chr1:153797387-153799109
Coord C2 exon
chr1:153797290-153797386
Length
1723 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
ATGTTTTATTTCATTTTTAGGTG
3' ss Score
11.73
Exon sequences
Seq C1 exon
GAGAAATTAAGGACTCTGTCCCTGGAGGCCAAGTGCAAGGGCGTCACTCTGTTTGTGCTGGCCTTGGGCCCGGGCGTGGGGACCCGCGAGCTGGCAGAGCTGGTCCACGTGGCCAGCTCCCCCTCCGAGCAGCACCTGCTACGCCTGGAAGGGGGCTCAGAGGCAGAGGTGGCTTATGCCCTGGGCTTCACGCGGGCCTTCCTGAACCTCTTAAAAA
Seq A exon
GTGAGTGGACAGGGATGCCTGGCGGGTGGGAAGAGGCAAGCACAGAGCCTGGCATATGGGTGGGTGGGTGCCCATGGCACCATCGCCCTTGCTGGGCTGTAGGCTGCCCCGTGGTCTCCACCTCTAGGGCAGACCCCAGGGAGCACCCCACTTCCTGAAAACCCTAAGCTACGTTGCCCTGACACGCTGCCAAGCTTAGTGTTGGCTTCTTGTCTGGTGGCTGGGAGGCCTCAGGTTTCCACCGAATCTTTTGATTTTGTCATTTACCAGAATGAGGATAAAAATCTCTTCTCTATTTGTGAAGCCTATGTTCAAATATGTGCGTGGAAGCAACACTGCTGTACGTGCATAAAGAATAGTTACTGTTATTGCTGTGTCCAGTGATCCAGAGTCCACTGCTATAGAACAGTGCTTCTCAGATTTTAACATGCACATGCTTTTCCTGGGGATCTAGTTACACTTTGGATTTTGATTCAGTGCGTCTGAGCTGGGGCCCGAGAGTCTGCATTTTTAAAAAAGATTTCACTGAAGTATAGTCAGTTTATAATGTTGTGTATTTCTCTGTGCAGCAAAAATGGACAGTGCACATTTTAAATAAGCCCCTGGCTGATGCTGCTGGTGCAGGGACCGTACTTTGAGTAGCGAGTTTTCAGGGACTTGCTAGGAAACGAGGGAGACAGGACAGAAACCTGGAACCTCTCATCTCAGGTTGGAGCACCGGTGAAAAGTGCTGTGACCACGCAGCTTGGCCAGAATTCTTCCCTGTGTCCTGTCCTACTTCCTCACTTCCAGTCAGAACAAGTTGAATGAGATTTATGGGTAACTGGCACCAAATCTGTATCCTAGCATGATGATGGAGATGGTTAGGACTGGAGGGTGGGTATTATCCTGGTCACATTTGCAGGAGTTTGTCTTGGGCTTTGTCCAACCGTGCATAGTCCCACACAACTCATGTGTGGGTGCCTCCCTGTGGCGTGGGAGGCCTTCCTGCCCTCTTTGCTGGGGGACATCAGCTTCTCAGTTTATAAGTGGGTATGACATCCCGTCACATAAAGCTCCGCTGTCACTGAGGGAATAAAGGCAGTCTGATGGACACCTTAGAAATAGAGACACAGCACTTGTGCCTCTGTAACTTGAGAGACATGGACATTAATGAATTGGTTCTAGTCTAATCTTTGCCACTCAAGAGCTGTGTGATTCTAGAAAGGTCAGTGAACCTTGAGATTCCTTACCTTTGCAAGAGATGGAAGAAGGAACTGTAACAGATGACTGAAGGCTTAGTGATTCTTTGAGGGACAAGGAGGCTAGAGGATTATTTTTCTAGTCTATTTTAATTTCACTTTACTTTATATGTTTTATTACATTAGGTTGCATTTCATATTTTGTTCTATTCTTTTATGTTATGACTTAATTTTATATTGCTTATACAATAGAATTCATTTTATACTTTCATTTTGCTTGTATTTTTATTTTTCTATTTGTTATTTTGTGCTTTGAGTTTACATCTTTTTGATTTTATGTCAATAGACTTTTTTGTTTTCTAGTTTATTTTGTTATACTTTATTTTGTTTTATTGTATATTTTACACTTTAATTGATTTTATTTTATGTCTTATGTCTTAATGGATAATATTTTGGTCTTGTGCTTTATTTTACTTCATTTTATTTTTGAGCTTCATATCATTTTATGCTTTATTTGATGTGATGTTTTATTTCATTTTTAG
Seq C2 exon
GTGACACTAATCAGTACCCACCTCCAGAGCTCATTGAAAAGTGTGGGGGCCCAAGCCGAGGGGACACCCTGCTGCAACGCATCTTGCCTGTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021139:ENSBTAT00000028173:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTCCCTGGAGGCCAAG
R:
TTGACAGGCAAGATGCGTTGC
Band lengths:
298-2021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development