GgaINT0094998 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWS8]
Coordinates
chr2:42174206-42175947:+
Coord C1 exon
chr2:42174206-42174877
Coord A exon
chr2:42174878-42175912
Coord C2 exon
chr2:42175913-42175947
Length
1035 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
AACAGTTATTTACAGTACAGATA
3' ss Score
-1.28
Exon sequences
Seq C1 exon
ATAAATGCAAGCCCAGTACCAACTGCAAAGTGCCCATTTCTCCACCTCTTCTGATGGATATGGATATTACTTACATCATGGACAGCTCTCGCAGCATCAGCAGTGAAGATTTTCAGAGAGCCAAGGACTTTGTGAGCAACATGATAGATCAGTTTGTCATTGCTGAACAGCCAAGTGAATCTTTAGGAGGCACCAGAGTGGCATTGGTACAGCAGGCTCCCAGAGGCTTCCTACCTGACAGAAACAAAATCCCTGTGGCCTTGGAATTTGATCTAGAAACATATAACAATAAAGATTTGATGAAGAAACATATCCAGGAGTCTGTTCACCAACTAGAAGGGCCATCAGCCATTGCTTCTGCATTACAGTGGACAGTTGAAAATGTATTTTTTAAAGCTCCCAGACAAAGAAAACACAGGGTCGTATTTGCAATAGTTGGAAGCAAAACAAGCACACAAGACAGAGAGAAGCTAAGAGAGATTTCACTTGGAGTCAAGTGCCAAGGATTTACCATGTTCACTCTTGCGCTTGGCAATGATCTGAGCGACAGTGAGCTGATGGAACTATCAAGCTCTCCCACAGATCAGCACTTATTGATATTGGGTAGGACTTCAAAGTCTGAGATGATATATGCTCAGAGATTTGCCCGGGCGTTTCTAAATCTGCTACAAC
Seq A exon
GTAAGTCGCATACAATGCTGTTCACTTAAGTTATGGAAAGAAGGATAAATGCTCTGTAGAAAAAGGCAGTTAGTATATGTACTACTTCTTAGTTTCTAGTCATAATGTAACTATTTGCTATTTCATCTATAGTTTGTAGCAGATGCAGCTGGACACTAATGGAATTGCCAGTAAATACAAAACAATAATACATTCTTGCTTGAGGCCAAAATCTTGAAGTTTTTTTTCTCATTAAGTTTGTATTCAATGTATGGCTAAGCTGACTTCACTTTTATGAAGGAAAGACTATTCTTCAGACACGAAAAACAGTTGTTCTCCTGATTTAGGCTTACATTTCTTCTCTGGCCATTGGCACCTACGTTTCTCTTCTGACCCTTGGCAGGTCCAGATTTACTGAGCTGTTAATGCTTATTTAGGCTTTTGGGCAGACAGAAGTTTAAACAACAGCAGATCTGGCCTTAACCTCTCTTTACTGAAGTTATTCTGCCTCTGTAGGGCAGAGAAAGAACTTCTGTAGTTTCTAAGACCTGTTACTGTAGATTAACAGTTTTTTATGCTTTGAAGTATATTCAAGAGAGTGTCAAGAAGGAAGTTGTCACTGACTTGAAATCCCCATCAGAAGCATGTGTTTAGGTAAAACAAATTTGCTAGAGTGTATTACAGAGGAAGACAAAAGTCTAAAGCATTTTTTTCAAGAGTTGCTCTCCTCTAGATGATCTCTGTCATTTTCATGTTTCTGGACATCTCTCTAGAAAGCATAAGATACAAACTCCAGCTAACAAGAAAATAAATCTTTTTCTGCTTTTTGTTAAACATAGTGGGGTTGGGAGGAATTTAAAACTCACTTGTGGTATTGTTTGCTTTCTCCACAGAAGAAATGAACAGTTATCCTCCTGCTGAACTTCAAGAGGAGTGTGAAAACTTAGATCGGGGTGACACACGAGATCAGATGTCTGTGACTGAAAGGTTTGGAACTGCCTATTGAATCTTACACACATGAGCATGTAAGGGATAAAACAGTTATTTACAGTACAG
Seq C2 exon
ATAACAGATATTTACAGTTATCTCCAAACATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567:ENSGALT00000018866:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=86.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]