BtaINT0004974 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDL7]
Coordinates
chr11:103811728-103813499:-
Coord C1 exon
chr11:103813421-103813499
Coord A exon
chr11:103812891-103813420
Coord C2 exon
chr11:103811728-103812890
Length
530 bp
Sequences
Splice sites
5' ss Seq
TAGGTACCT
5' ss Score
4.67
3' ss Seq
GCGACTGCCTGTCTTTGCAGATC
3' ss Score
10.06
Exon sequences
Seq C1 exon
GTGCTGGGGCCCCCGCCCGCCCTCCCCAGGCTCCAGAGCAAGATCCCCTCGAGAGACCAGGCCCCCGTCGCAGAATTAG
Seq A exon
GTACCTCGTGCCTCCGCCTGGACTCTGCTCCGCTCCGTGTGGCATCTTGGGGGTGGGCGCCGGGGTAGAGACGCCCAGGCGGCAATGGCATTGGGGTGCAGGTGTGGCACCCATTCCCCCGGAGACCTGTCAGACTCCCACCAAACCCACCAGCATACAGGGGCTTCCGGGACTCGCTGCATTTAAAACAAAACAAAAAGAGGGTTTCTGTCCCTGAGAAGCAAATTTCTGCTCCTGGAAGGCAGGGCATGACCACCAGGCTGTCCTGACTTAGAGAATGCAGGCCTACAGCCACAGTGGCTCCCAGCAGACGTCTGTCACCCGCACCCCCCGACACACATACTCAGTTTTCGACATGTTCAGAGAGGGTGGCTCTGTGCCAGACGCCTGGGCACAGCTGTGAGTCACCCAGACGTGGCATCTGCCCCCAGAGGGCTCCTGCGAGTGGATGTTGAGAGCAGAGCCAAGATGGGGGGTCTCTAGGGGGGCTCTGCGCCTCCTGGCAACCCCGCGACTGCCTGTCTTTGCAG
Seq C2 exon
ATCACGGGAAGAAGGTTGGAGCCACTGAGAGCTCCCCTGTCCACCCCCAGACGCCAAGTCCAGCCTCTGTCCACAGTGACCTGCAGATGCCCTCGGACAACGTGCCCACCCTGGCTTCCCGCGATCCACCCGTGAACGTCCAGGCTGCTATGGCCGTCCTTCGAGACCTCCGCCAGCAAATCCAGGCCGGGCTGGAGCTGGCCCGGACTCGCCACACGAGCCGAGGACTGGAGCTGCATGGCCTGGCAGGGAGGAGGCGGCCAGGCCCCTGGAAACCCCCAGACGTCAGGGGTGCCTTCTGGAAGAGCCCTGGGGCCCCGACGGACAGGCTGCCCACCTCTGAGAGGGCTGGGAGCCTCCCTGCTGCACAGCGCTGGAGCCCTGTGGCCGGGTGGGAGTCCTATCCACACAGGACCTGGGTGGCCCCAGGACGGGACACCTCCTTCCAGAGATGCGTGAGCCCCACCGAAGGGCCGAACTCCTTCCCGCAGCGGCCCTGGAGCGCCTCGGCCAGGCAGGCCTCCTGCCCACCAAAGACCTGGGCTTTCCAAGGACGAGACCCCTCCTTGCAGAGGCCTGGGAGCCCCCCCGAAAGGTGGGTCCCCTTCCTGCAGCGGTCCTGGAGCGCCTCGGCCGGGCAGGCCTGGGGTCCACAGAGGGCCTGGACTGCTTGTGAAGACCCGGCAGACCCCGCCCCGAGGCCATGGAGCCCTCTGGAAAGGCCGAGCCAACCCACCTGGCGGCCCTGGAGCACCTCCTTCACACAGGGGCCCAGCCCCCTGTATCAGGGCAGGGGTCCCCTGCGGACCCCCTCAGGGGCCAAGCTCGCCTGGCCGAGGCCCAGCCAGGGTGCCCTTCGGAACGCGCCTGAGAAGGAGAATGAGGTGCGGCCACCTCGGCCTTGCCCCAAGCCCCGGGGGGCCCTGGGCCCCCTCCACGGCTCCGAGTCCCTGCGTGAGTTCATGCGCCAGAAGACTGCAGCCTGGCGGCGGCAGGCCCTGGAAGAAAAGGCCTCGGCCATGCGCTCGCTGGAGCTCAGAAACCAGAGGCTGCAGGGCGCCCACAGGAAGCAGAGGGAGGCCGTGCTGGGCAGAGCCGTCCCCGTGGTCTCCCAGACGACCCCCGGCATCGTGACCTTCGTCCCGCACGCGGCACAGTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023064:ENSBTAT00000031357:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAAGATCCCCTCGAGA
R:
CTCTTCCAGAAGGCACCCCT
Band lengths:
353-883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development