MmuINT0004676 @ mm9
Intron Retention
Gene
ENSMUSG00000048038 | 4932418E24Rik
Description
RIKEN cDNA 4932418E24 gene [Source:MGI Symbol;Acc:MGI:3045295]
Coordinates
chr2:26136005-26143547:-
Coord C1 exon
chr2:26143455-26143547
Coord A exon
chr2:26137144-26143454
Coord C2 exon
chr2:26136005-26137143
Length
6311 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTTGTCGCCTGTCTTTGCAGGCT
3' ss Score
10.42
Exon sequences
Seq C1 exon
TTCCAAGGACAAACTTCAAAAAGGTCAAAAATGCTTCTTGCAAAAGAGAGATCTCAAAGTCTTCTATCCTTCGCAGAACTGCCAAAGGCAGAG
Seq A exon
GTGAGGCTTTGCTACTTCAGACCCCAGAGTCTGTGAGTCTAGCTGGTGAGGGTGACACATTGCTCTTGATTCTATGCTGGGGACATTGGCTACCAGAGGCCACCTACTTTGCTATATACAAGGAGCTTGGGATCCTGGGATCTGAAGGTTCCTTGCCATGGAATGGAAGTCTGTAACTCCCCAAGTGATGTGAGCTGTCCTTATGCCCCTGCAGACTGGAATGGCATAAAGCCATCTGGCCACACTGCTCATGTTCTCAGTCTATTGCTCATCAGAACAGCGACATGCTAGGAAGACTGAGTAAAGTGGTACCCCTACCTTTCTTCTTATCTGAGGTGTGTTGCTGCTTTGATGCCCTCCCAGGTAACCTGGAAAAGGGTATGCCTTCCTGATTTGGGATCAAGGACTACAGGTGGAAGCATGCTTGGTGATACCTGTATCTCTGTGGCACCATGAGCTGCCTGCAAGTGCTCCACCCTGGCCTATGTGGCTGTCTGTTTTATGGCAAGTTTTCAGGGGATCTAGTTAGAGACCCTATGGGTGGTAAGCTCTGGACCTGTGCTCCTTATTAGTGCACCAGACACATTCTGAGACTGTACCTGAGCCCTTGTTGAGGCTCCTGCTCCCGCCTGGCCTCAGCAATACCACTAAGACTTCCCAGGTAGGGAGATGGGTTGTGGTCAGTTTGGCAGGACTGAGCCTAAAGTCCACACAGGGTCTGGGAGAACTTTTAAGGTGCCTTTTGGAATGTCTCTGCCTCAGTTTCCCCACTTCATGAGGCCACTATTCTGGGCCCATCAGCATGGGTAGCATGTGCTCTGTGCACAACCTCACCTCCATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGATTCATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCATCTCACCAGCCCCCTCACCTCCATTTCTGTTCAGTGTCCTGCCTCCCCTGCTCCCAAGCAGTCTCTGTCTTCTAGAGTAATGAGTCTTTGCCTAGCACATACTATGCTCAGCAGAGGGTGCACATGAGTCTTCCAGCTGGCCAGAGGTGGCACAGGTCAGGAAGGACAAACACCTCTAGAATCCAAGACTGAGAGACAGCAAAACTACAGGAAGATTCTGGAAGGTGCCCTGAACAGGCATACAATACAGCCATCTTCCACATCATCATCTCCCTCATTCGCAGCTTTCCGTTGTTTTGTTTTAATGGCTTGCTTGAAAAATGACCTGCCGTCTGCCTGACACAGGGTCAGAGGGCGCGCCACCAGCAGCATTCATCATTGTAGTCACCGTGTCACCCTGATGGTAGTGACCATTAGTTTCTGTCAGTGACGAAGCCACAGCTGGGCTAAGGAGAGATGAGTTTGGGTTCAGGGGTCAGAGCTACAGGACTTGGGAATTGGATGAATTAGAAATTTGCTGTAGTTAACAAAAAATTAAATCACAATAGTTATAAAATATTCATCCATCCGGGCCAAAGGAAAATGAAGCCCGATATTTAATTTCAGATTATATCACCTCACTTTGCATTTTTTATCATAGATTAGGTCGGCCTGGAGCTTTGACAGGGCACTTGGGGACTCCATCCATTTCCACAGATTAAAAATCCTCCCATAAAAAAATTAATTGCCATTAAACTGTTCAGCAGAAGAAAAAAATGTGCCCATCAGGACCCATTTATCGACCAGGACTCCTCTGGTGGGCTAATGGGGAGCCTGGGTGGCTGTGAGGGAGGCCAGTGGGGCCATTCTCCCTACATGGTGCCTCTGGCCCAGTGCCTGGCGCTGGCCCAGTGCCTGGTGCGCAGAGAGAGCGTGATCAGCTCAGTGCATCACCGAAGGGCAGGGCTCAAGTGCTTACGAAGCTCCTTCCCATCCCTACTGAGCCTGGATGTGCTCTGCACAGCCAAACCCCACCCCAGACTCCAGAGTTCAGCTTGGGTTTCCACCTGCAGAGCTGTGAAAGCAGCAGTCTCTGGCACGTTACCCTCTCTTATAGATGGAATAGTCTAAGCACTGGTCCTACAGCTGTATCTCATGAACAGCAGCTGGGCTTAGCCTTGGGTCTGGAACTGAGACTTCAGGGTTGACCTTTCTTGGCCCAGGGTCCTGTTCTTCTGGGGAATGTCTTAAAGTGTCTCCATTCAGCGATGCAACCATCTCCTAAAACAAAAGCAAAAATTTGCATACTAATGGTGCAAATTTATTTACATATTTTGCATAAAGGATTAAATCTTCCCTGAATATTTGATACTGTCGGGTGCACAAGCATCCTCAAGTGTTTTCAGAGTTAATTGATGTGTCAGGAGTGTGTTTAGGGCTATTTCAGAAATTGTTGGGAATTCTGTCCTAATCCCTAGCCAGTGTCCACTTAACAGTTTTGTTTTTTTTTGTTTTTAGTTTATTTTACATGTGAGTGTTTTACCTGCATGTATGCATATGCACCATAAATATGCCTGGTGCCTCTGAAGCTGGAAAAGGGCAGGTAACTCCTTGATGGGAGTTACAGGTCACATGCGAGTCACCAGGCATGGTGCTGAAAACGGAACCTGGGTCCTCTGGGAGAGCAGCCAGTGCTCTTCACACTGAGCATCTCTCCAGCCCCTTAAGAATTCTTTAAAGTGAAATTTAAGTCAGTAACTCAAAGAGCAGTTTTAGAAACCAAACACTCAAGCACAGTAGAGTCAAGAGGACTGATTTGAGACTTACATACTCAGACATGATCACAGGAAAACAGATTTTTAAAAATATATATAACAAAACCAGCATGTCTCTATAAAAGCAGGAAACTTTTATGGATAGTGAAATCATGGCAGTTCACGACGTGCACTGACCTGGAGTCTAGCTGAGATGTTTGAGGTGTGTGTGTTGGAGTTGTGTGGTATGATGGTGAGTGTTGTGTGTTCAGAACTAAGGCAGATGTGAATCCTTGTGATGTAACATGGGTGAGCACTGATAGACATCTTCACAAAGCATTTGAGTTTATATGGATTCTGGCTTGCTATGTGTTTAGAAACTTTTTTTACTTTTGCCTTTTTTTTTTCTGCCCCACATTCTGTTACACAGCCCCATATGGGATCAAAACCTACAGTTTTAAGAAGTTGAGGGTCAAGCTGGGCAGTGGTGGTCCACACCTTTGATCCTAGCACTTGGGAGGCAGAGGAAGGCAGATCTCTGTGAGTTTGAGGCCAGACTGGTCTACAGAGTGAATTCCAGGACAGCTAGGACTATACAGAAATCCTGTCTTAAAAAACAAACAAACAAACAAACAAAACCCAGAAAACAAATCAACCAACCAACCAAACAAACAAAATAGAGGAAGCAGCTGAGGCCTAGAGAAAGCATAGCCTGTCCCCATAGAGGGACTGGCTGGATGATGCCCGTCTTCTTCCCAGGAAAGGGAGTTTAAGGCCTGGAACACTGGGTGACTTGGAGCAGCTCGCCCCAGCAGAGTTTCTCCAGATTATGCAACATAGGCCTTTGTTTTCCTTTGACCTGGATAGGTGAATATTTTTCAACTATCATGACTTAACTATTTTTCAAAATGTTTTAAAATTAAAAAAATATTTATTTTTAAGTTTTATGTGTATGGGTAGTCTGCCTACATATATGTCCATGAGCCTCTTGCATGCCTGGTACCTGAGTAGACCAGAAGAGACTGTCAAATTCTTGGGGACTGCAATTACAGGCATTGTAAGCTGCCATGGGTACTGGGATCAAAGCTGGGACTGTGGAAGAGCAGCCAGTGCCTCTTAACCATTGAGCCATCTCTCCAGTCCCCAATGGCTAAAATTTCTAAACCATGGCAGATTGCTATTTAACTAACAACTGTCAGGTTAGAGGAGGGAGGAGGGAGGAGGGAGGAGAAGGGCTTGACTCAGGTAGGCTGCCCAAAGGGGTCTGTGCTCTGGATAGTCTTACCTGTGATGTGTTGCCCATAGGGCACAGGGCAAGTCCTGGCTTGGTCTACATGGATGATCCCTGGTGTCACCTGAAGCAGGGGTGTGGGTAGAGTGACTTGAACCATACGGTGTAATCTCAGTTTTGCAGAGCGGACTGGAAACAGTGGTATGTCTGTGCCTGTGACCATGTTTGTGTGAGAGCCTATGCATGAACGTGCGTTTGCTCCCGTGTGAGTGTACCAAGCATTTGTATATGGTTGCCTGTGTGTATTTGAGTGTGGGCTCTTATATGAGGGGGCACATCTGTGAGCATGCGAATATGCAAGCCTGTGTGCTAATGTAAATGAGCTTATGTGAATGTACGTGAGCCTGTGTGGGAGCTTTGAGTATGTGGATACATATGAGCCCATGTGAATGTGTGCTTGTGTTTAAATACATGGATGTGTGAATCTGTGTGAGCATTGTGGTAGCCTGTGTAAGAATGCTGTGAACTTACTGTGCACTGTGGATAGGGCAGAGTGTTTGTCCTACATGGTGGCCTTCTAGAAGGAATTGCATAAAGTATACATGACTATATTCAGAAGCAAAGGCATGATGGATGGGATGCCCTGGAATGTCCACATTTTCTCTGCAGGATGAACATTCTGTGCTCTGCCACATCTGGTTTGCAGTAAGTTCACAGCTTATTTGTTTCTTTGGTTTGGTTTGTGTTTCGAGACAGGGTTTCTGCGTAACAGAGTCCTGGCTGTCCTGGACTCGCTTTGTAGATCAAGCTGGCCCCAAAGTCTCAGAGATCCATTTGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGTGTGTGCCATCACACCTGGTCAGTTCACAGTTCTTTTACACAGGCTTCTATAGAGGATGGAACCTGTGTGAGCCTGTGAGTGTATGTGAGTCTGTGTGGAACTGAGCATCGTGACTTGTGAGTGTGTAAGAACGAGCCTTGTGAACATGTGGGAATGAGTATGTGAGAGTGGGTGGAAGGCCTGCCTCCTGTCTTTGTGGGGCTTTGTAACTGGGGTTGTCAAGGTGGCCAGTCAGTGTTAGCATTAGATGCAATTTGAGATTATGAAGTAAAACCTGAAACAATCATCGGGACATGTGACATGTTAAGTCACATGTCCCCATGTGATAGTGTTAAGGGAAGCTTGGTTGTGTTGGTCATTTATTTTTGTACCATTAGGCCAGCTAAACTTGTCTCTGATCCTGATTCCACTGATGTGACTCTAACAAGTTTCAGGGAACCTTAATCTCTTTGCTAAGGTCATGACATTGCTGGCTGTTGTGGCTCTGGTGTGAGCCCATGGCTGAGTGACCAGCTGCAGGTGTCATCTGGGGCTGTGGCCTTGTCATTGTTCCTGGTCAAGTGTAGGTTGTGTGCCTGGGCTAGTGTTGAACAGCCCATAGGTAGACCTGTTAGGGGCAAGGTTTTATATAACCTCCATTGAGCAGGCTCCTAGGACTTCACTATTACAGAGATGCACCATGCTGGCTAGTGACTAAACGATTGGCTTTGTTCCCACAGGGGTTTGGATATGAGGGGTTTCTCTGTGGACCCTTGCGGGGCATGCTAAGCTGTCTCTGGAATTGGTATGGCCCCTTGCCAGTGGTCTGAGAGCCATGGGTCCTACTGTGTGTTTTCTATTTAAGATTCTGAGTTGGCTGGTGTGTACGCCTGGCGAAAAGGACAAGCCCTCGTGAGGCGGTTGCTTGGGCCCCCTGCTGCCCTCTCCCGGCTCCAGAGCAAGGTCCCTGACATGGAATTAGGTACCTCAGGCCTCAGCCTTGGCCTGGTCTGTTTTGCTGTGGCATTAGTGGGTGGGCACAGAGAACATTTCTTTGCTACCTGGGAGGGTGGAAGCTGGGTAGCCTCTCTTAAGCTTTCCCTCAGAGATGGAAATTTGGGTATAATTATCTTTACAAACCGGAAGAGAGAGGCTCTTCTCAGCTTTGGGAACAGATGTACTACTTGATCTTTTGTGAAGAGAGCAGATGGGAGAGACCACTCATGAGGTGGACACCCATCACCCCTCCATGTGCACCCTGTTAACACACATAAAACAGGTGGCTCACTTAAAAGCAGCCCCTATTCTCCTTTGTGTGCTGATCATGAGGGCTGAGGCTGAGAGGAAATTTGTGGGGATGAGGCCAGGGCCTCCCTAGTCACCCCATGTTGTCTCCTGAATGGAGGAACAGGTCTGTTCTTTCCTCCAGCCCTCAGACCCTAACACTACTTTGTCGCCTGTCTTTGCAG
Seq C2 exon
GCTCTGACAGGAAAGCAGCAGCTGTCAAGGCCTCACCTGCCCACACCTGGTTGTGTAAACCCATGTCTGCCCACAGTGACCAGCAGGTTTCCAAGCATACACCCAGCCTGGCTTTCCAGGATCAGTCAGCAACTATCCATGGTGCTATGGAGACCCTACAAGACCTGCGCCAACAAATCCAGGCTGGCCTGGAGCTTACCAGGAGCCCCAGAGTGGACAGGAAGCTCTCACTATCGAAACCAAAGCCACAGAACCTGGTAGGGAAGAGGGATCGGGGACTCCAAAGCACCCAGGACATGCAGGGCTCCTCAAAGACTGCTTGGACTGTGACAGAAGGAAAGAACTCTTCCTTGCACAGAGCTGGGAACTTGCACAGCCAGCAACACAGGAAGAAAGCCTTGGCTGAGCACGAGTCTTGTCCACGGAGGACCTGGACAGGACAGGGGCAAGACTCCTCTTTCCCCAGGCCTGGGAGCACCCCAGAAAAACCACGTTTCTTCTCACAGCGGCCCTGGAGTGCCCTGGCTAGGCAGACCTACCCACAGAGGACCTGGGATGCTCAGGGCCAGGACATCTCTGTCCAGAAGTCTGGGAGCTCCCTTAAAAAGCCAAGCCCCTTCTCACAGCGGCCCTGGAGTGCCCTGGCCGGCAGAGCTTACTCAGCTTGTGAAGATCGGGAGGTATTTGAGCCCAGTCCGTGGAACTCTCTGAGTCGGCCGCATTCTGCTCTCCAGGATCCCTGGAGTAATTCTTTTGTGCAGAGGTCCAGTCCCTCCAGCAAGGGCAAAAGTGCTGTCCCTCCTCCCTCAAAAGTCAAGCCAGCTTGGCCAGAGCCTTCCCAAGACTTGCTGCAAAGCAAACCAGCAAAGGAACAGGACACACCCTGTCCAAGGCCACGGGGGTCTCTGGGCCAGCAACATAGCTCTGAGTCCTTACGTGACTTCATGCGTCAGAAAGCTCAGGCCCGACGGCAGCAGGCCCTGGAGCAGAAGGCCTTGGCTGCACACACTCTGGAACTGCGGAACCAGAGGCTGCAGGAGGTATACCGGAAGCAACGAGAGGCCGTCCTTGGCAAGGACATCCCTGTGGTCTCCCAGAGGCGCCCTGGCATCGTCACTTTTGTTCCCATGCAGTCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048038-4932418E24Rik:NM_177841:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.915
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: