RnoINT0030849 @ rn6
Intron Retention
Gene
ENSRNOG00000027392 | Ccdc187
Description
coiled-coil domain containing 187 [Source:RGD Symbol;Acc:1565512]
Coordinates
chr3:3733370-3740945:-
Coord C1 exon
chr3:3740853-3740945
Coord A exon
chr3:3734500-3740852
Coord C2 exon
chr3:3733370-3734499
Length
6353 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCCACTGACTGTCTTTGCAGGCT
3' ss Score
9.13
Exon sequences
Seq C1 exon
ATTCAAGGACAAACATCAAAAAGGTCAAAAATATTTCTTGCAAAAGAGAGATCTCTAAGTCATCTATCCTTCGCAGAACTACCAAAGGCAGAG
Seq A exon
GTAAGGTTTGCTACTTCAGACCCCAGAGTCTGTGATTCTAGCTGTTAAGATACATTGCTCTGGATTCCGTGCTGGGGACATTGGCTTCCAAGGGCTACCTGCTTTGCCATATGCAAGGAGCTTGGGACTCTGGGATCTGAAGGTTCCTTGCCATGAAGTGGTAGTCCACAGCTCCCCAAGTGATGTCTTGTGCCCCTGCAGACTGAAATGACATAAAGACATTGGCCACACTCCTAATGTTCTCAGCCCATTGGTCTCCAGAACAGTGGCATGCTGGGAAGACTGAGTAAAGTGGCACCCTTGCCTTTCTTCTTGTCAGAGATGTGTTGCTGCTTTGCTGCCCTTCCAGGTAGCCTGGAAGAGAGTGTGCCTTCCTGATTTGGGATCCAGGACTACAGGGGGAAGCGTGCTTGGTGGTACCTATGTCTCGGTAGCACCATGAGCTGCCTACAAGCGCTCCACCCTGACCCATGTGGTTGTCAGTTTTATGGCAAGTCTTCATGTGATCTAGTTAGTAACCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGCGCGCGCGTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTGTGGTAAGCTTTGATCTAGGATAGCCCCTTTCCTGAGGTTGGATCCTTATAGAATCCCAGACTCTCAGTCACTATGCAGACTGCTGCTTCTACAGCATGTGGGGGCAACCAAAGGGGTCCCGTCATCTAGCTGTATCCATGGACCCCAAAGAAAGGCTTGGTGTGAGCATTTTGAGATTGTTGGGAGAGAGTCAAGCAGAGTCTAGAATGTCTTTGAGGTATGTTGGGAGTGAGGTAAGTTGGCTCCCATTCTCTAAATGTGGGAACTGAGACCCAGGGAGGCTTGGCAGCCTGCTCACCACAAAGGTAAAGACCTGGGCTGGGCCTGACCCATCTGGCTCTAGAGCACCAGGTATATTCCGAGGCCATGCCTGAGCTCTTGCCGAGGCCCCCCGCTCCAGCCCAGTGTTCATTAAGACTTCCCAGGTGGGGAGATCACTACCCAGTGGGGTGGTTGTCAGTTTGGCAGGACTAAGCATATCTCTCCGCCTCAGTTTCCTCACCCCATGAGGTTACCATTCTGGACCTACCAGCATGGGTAGCATGTGTTCTGTGCACAACCTCACCTTCATTTCTGTTCAGTGTCCTGTCCTCTCTGCTCCCAAGCAATCTCCGTCTTCTAGAGTAATGAGTCTTTGCCTAGCGCACACTATGGAGGGTGTACATGACTCTTCCAGCTGGCCAGAGGTAAAACAGGTCGGGAAGGGCAAATACCTCTGGAATCCAAGACAGAGCTAGCAAAACCACAAGAAGATTCTGGAAGGTTTCGTGAACATACGTAAGATGTAGCTGGCGTCCGCACCATCCGCACCATCGTCTCCCTCATCCCCAGCTTCCTGCTGTTTTGTTTTAATGGCTTGCTTGAAAAATGACCTGCTGTCTGCCTGACACGGGGTCAGAGGGCGCGCCACCAGCTGCATTCATCATCGCAGTCACCGTGTCACCCTGATGGTAGTGACCATTAGTTTCTGTCAGTGACGAAGCCACAGCTGGGCTAAGGAGAGATGAGTTTGGGTTCAGGGGTCAGAACTACAGGACTTGGGAATTGGATGAATTAGAAATTTGCTGTAGTTAACAAAAAATTAAATCACAATAGTTATAAAATATTCATCCATCCGGGCCAAAGGAAAATGAAGCCCGATATTTAATTTCAGATTATATCACCTCACTTTGCATTTTTTATCATAGATTAGGTCGGCCTGGAGCTTTGACAGGGCACTCAGGGACTCCATCCATTTCCACAGATTAAAAATCCTCCCATAAAAAAATTAATTGCCATTAAACTGTTCAGCAGGAGAAAAAAATGTGTCCATCAGGACCCATTTATCGACCAGGACTCCTCTGGTGGGCTAATGGGGAGGCTGGATGGCTGTGCGGGGGGCCGGTGGGGCCATCCTACCTACATGGTGCCTCTGGCCCAGTGCCTGGGAGAGCACAGTCAGCTCGATGCATCACCACAGGGCAGGGCTGAGATGCTCAGGAAGCTCGTCCTCACCCTCACCCTCACCCTCACCCTCACCCTCACCCTCATCCTCGTCCTTGTCCTAGTCCTTGTCCTCGTCCTCATCCCCGCTGTGACCTGGATGTGGCCAGTACAGCCAACCAACCTCACCCCAGACTCCAGAATTCACTTGTGTACCCACCTTGCCTGTGAAGGCAGCAGCTGTCTTTGGCTGTCAGGAGGCACTGCTAGGCACATTCCCTCCCTCTCTTATACATGGGAAAGTCTAGGCACTCGCCCTACAGCCGGATCTGATGAACAGCAACTGGGCTTAGCCTTAGGTCTGGAACCATGAGGCTCCAATGTTGACCTTTCTTGGCCTGGGCTCCTGTTCTTCTGGGGAGTGTCTTAAACTGTCTCCGGTTCAGTGATGCAACTGTCTCCTAAAACAAAGCACATTTGCATACTAATGGATGCGTGCTTATTTGCATGTTTTGCATAAAGGATTAAATCCTTCCTGATTATTTGATACTGTAGGGTGCAAAAGCATCCTCAAATTTTTTCAGAGTTGATTGATGTGTCAGGAGTGTGTTCATGGCTATTTCAGAAACTGTTGGAAACTCTGTCCTAATCCCTTGCCAAAGTCCACTTGTTAGGGTTTTTTTTAAAGTTTATTTTACTTGAGTGTTTTACCTGCTTGTGTGCATATGCACCATATATATATATATACATACATACATATATATATATATATATATATGTATATATATATATATATATATGCCAGATGCCTGTGAAGCTAGAAGAGGGTAGGTAACTCCTAGACTGCCATTACAGGTCACACATGAATCACCATGTGTGGCTGCTGGGATGTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCCTAACCACTGAGCCATCTCTCCAGCCCCATAAGAATTCTTTTAAGTGAAATTGAAGCCAGCAACTCAAAGAGCAGTTTTAAAAATCAAACGCTCGAGTGCAATCTAGTCCAAGTGGACTGATTTGAGACTTCCATACTGAGGCATGCTCACAGGAAGATAGAAATGTTTTTCGAAGACCAGCATGTCTGTAAACTCATGGCAGTTCACGACATGCGCTGATCCGCAGTCTGGCTGAGGTGTTTGAGGCTGTGTGTGTTGGAGCTGTGTGGTGTGATGGCGTGTACAGTGCTCAGACCTGAGGTGGCTGTGAATCCTTGTGATGTTACATGGGTGAGCGCTGGCAGACGTCTTCATGCAGCGTTTGCTTATATTGACCACAGCTAGCAGTTTGTTTTCTATTCCGGGAGTTTTTGCCATGTTTTTTTACCATTGTCTTTTTTCTGCCACCACATTCAATTATAAAGCCCCTAATGGGATCAAGACCTACAGTTTAAGAAGTTGGTGCTCAAGCCAGGCAGTGGTGGTGCACACCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGAGGATCTCTGTGAGTTTGGGGCCAGACTGGTTTACAGAGAGAGTACCAGGTCAGCCAGGGCTACAGAGAAACCCTGTCTAAAAACAACAACAAAACCAACCAACCAAACAAACAAACAAAAAAAAAAATAGAGAAGCAGCTGTTCCCATAGAGTGCCTGGCTGCCGTCTTCTTCCCAGGAAAGGTAGTTTAAGGTGACTTGGAGCAGCTCACCCCAGAAGCAGAGTTTCTTCAGACTATTCAGCATAGGGCTTTGTTTTTCTTTGACCTGGAGAGGTGAATATTTTACAACTATCATGATTTAACTATTTTTCAGAATGTTTTAAAATTTTAAAAATATTTATTTTTAAGTTTTTTTGTGTGTGGGTATCTGCTTACATTTGCATGACTGGTGCCTGAGGAGGCCAGAAGAGACAGTCAAATTCTTAGGGACTGCAGTTGCAGGCATTGTGAGCTGCTCTGTGGGTGGTGGGATCAAAGCCAGGACTCTGGAAGAGCAGCCAGTACCTCTTAACCGTTGAGCCGTTGAGCCGTCTCTCCAGTCCCCAGGGGCTTGATTTTCTATACTAGGCAGATTGCTATTTAATTCACAACTGTCAGGTCTGGGGAGGGAGGAGAGAGGAGTGAGGAGAAGGGGTTGACTCAGGTAGGCTGCCCGCAGGGGTCGTGCTCTGGATGGTCTAACATATGACGTGCTGCCCATAGGGCAGAGGACAAGTCTTGGCTTAGTCTACATGGGTGATCCCAGCCTGGAGCAGGGATGTGGGCAGAGTGACTGGGAGATCACCAGATGTAATCTCAGGTTTGAAGAGCAGACTGGACACAGTGGTATGTCTGTGCCTGTGACCGTGTTTGTGTGGGAGCCTGTGTGTGGATGTGCATGTGAGTGTGGCAAGCATTTATATATGGTTGCCTGTGTGCTTTTGAGTGTGTGCTTGTGTATGAGAGGGCACTTCTGTGAGCACATGCGTGTGCTAGCATGTGTGCTAATGTGAACAAGCACATGCAAATGTATGTGAGCCCGTGCGGAAGCTTGTGAGTATGTGGATATATAAGAGCCTGTGTGTATGAGTGAGTGTGAGTGAACATGTGGACACGTGGATATGCAAATCTGTGCGTGAGCATTGTGGAAGAGCACTGGGAACTGTGGATGGGACGGAGTGCAGAGCGTTTATCCTACAAGGTAGCCTTCTAGAAGGAATTGCATAAATTGTAAGCGAATGTACCTGAAGGCAAAGGCTGGTGGGAATGCCCTGGAATGGCCACGTTTTCTCTGTGGGATGAACATCCTGTTCTCTACCACATCCTGGTTTATAGTACGTCCACAGATTGTTGGTTTGGTTTGGTTTGGTTTTTGAGACAGGGTTGCTGTGTAAGACCAAGCTGGCCCCAAATTCTCAGAGAGATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGTGCCACCATTGCCCGGTCAGTTCACAGCTTTTTTACACAGGCGTCTGTAGAGTGTGAGAACCTATGTGAGCCTATGAGTGTATGTGGGTTCGTGTGGAACTGGACATCATAGCTTGTGAGTGTGTAAGAGTGAGCCGTGTGAACACACGAGAATGTGAGTGTGAGTGTGAGTGTGAGTAAGGCCTGCCTCCTGCCTTTGTGGGGCTTTGTGACTGGGGTTGTCACGATGGCCAGTCAGTAATGGCATTGGATGCAGTTCGAGATGATGAAGTGAAACCTGGAACAAGCCTGTTTACCACGTGCGGTGTGTGTTAAGAGGAGCTTGGCTGTGCTGGCCATTTATTCCTGGACGTTAGGCGGTCTACACTTGTCTCTGATCCTGATCCCACTGCTGTGACTCTAACCAGCTTCACAGCACATTAACCTCTCTGCTGAGGCGTGCGCTCATCACGTTGCTGGCTGTGGTGACCCTGGTGTCAGCCCGTATGGCCAGATGCAAGTGTCATCTGGGGCTGTGGTCTTGTCATTGTTCCTGGTCAAGCCTGGGCTGGTGTTGGGTGGCCTGCAGGTAGACCTGTTAGGGGAGAGGTTTTATATACCCTCTACTGAGCAGAATCCTGGGGGTTCACCATCACACTGAGATGTACGTCAGCCATGCTGGCTAGTGTTCCCCCAGGGGTTCGGATATGAGGGGTTTCCCTGTGGGCCCTTGCAGGGTCTGCCAAGCTATCTCCAGGACTGGTGTGAACCCAGTGTTCTCAGAGCCACGAGTCCTGCTGTGTGTTTTCTATTTAAGATTCTGAGTTGGCTGGTGTGTACGCCTGGCGAAAAGGACAAGACCTTGTGAGGCGGTTGCTTGGGCCCCCTCCTACCTTCTCCCGGCTCCAGAGCAAGGCCCCTGCCACGGAATTAGGTACCTCACGCCTTGGCCTTGGCCTGGTGCTTTGCTCTGGCATTAGTGGGTGGGTACAGAGGAGATTCCTTTGTTGCTCTGGAGGGTGGGTATCCTCTCTTGAGATTTCCCTCGGAGACGGAAATTTGAGAGTAATTCTCTTTACAAACCTGAAGAGAGAGGCTCTTCTCAGCTTTGGGAGCAGATGGACTACTGCAGATCTTTGGTGAGGAGAGCAGATGGGAAGGAACGGCCACTCCTGTGGTGGCCACCCCTCCATGTGCATCCCATTAACACACATGGAGCAGGTACTCACTCAAAAGCAGTCCCTGCTCCCCTTCGTGTGCTGATCATGAGGGCTGAGGCTGAGAGGACATTTGCGGGGCTGAGGCCATGGCCTCCCTAGTCACCCCATGATGTCCCCTGAATGGAGGAACAGGTCTGTTCTTTCCTCCAGACCACAGACCCCCAACACTCCTCCACTGACTGTCTTTGCAG
Seq C2 exon
GCTCTGACAGGAAAGCAGCAGCTGTTGGGGCCTCTGCTGCCCACACCTGGTTGTGTAAACCCACATCTGCCCACAATGACCAGCAGGTTTCCAAGCATACACCCAGCCTGGCTTTCCATGACCAGTCAACAACTATCCAAGGTGCCATGGAGACCCTGCAAGACCTGCGCCAGCAAATCCAGGCTGGTCTGGAGCTTGCCAGGAGCCCCAGAGCGGCCAGGAAGCTCTCGCCATCAAAACCAAAGCCACAGAACCTGGCAGGGAAGAGGCACCAGGGACCCCGAAGCACCCAGGACACCCAGGGCTCCTTCTCAAAGGCTGCTTGGACAGTTACAGAAGGGAAGCGCTTCTCCTTGGGCAGAGCTGGAAACTTGCACAGTCAACAACACTGGAAGAACACTTTGGCTGAGCAAGAGTCTTGTCCACAGAGGGCCTGGACAGCACAAGGCCAAGACACCTCTTTCCTGAGACCTGGGAGCACCCGGGGAAAACCAACCCCCTTCTCACAGCGGCCCTGGAGTGCCCTGGCTTGGCAGAGTTACCCACAGAGGGCCAGAAAAGCTCAGGGCCAGGACACCTCCGTCCGGAGGCCTGGGAGCCCCCTTCAAAAGCGAAGCCCCTTCTCACAGCGGCCCTGGAGTGCCCTGGCTGGCCAAGCTTACTCTACTTGTAAAGATTGGGAGGTTTTTGAACCCAGTCTGAGTAGGCCACATTCCGCTCTCCAGGATTCCTGGAGTAATTCTTATGTGCAGAGGTCCAGTCCCTACAGCAAGAGCAAAAGTGCTGTCCCTCCTTCCTCAAAAGTCAAGGCAGCTTGGCCAGAGCCTGCCCAAGACTTTCCTCAGAGTAAACCCTCAGAGGAACAGGACATACCCTGTCCAAGGTCATGGGGGTCTCTCGGCCAGCCACATAGTACTGAGTCCTTGGGTGACTTCGTGCGTCAGAAGGTGCAGGACCGACGGCAGCAGTCCATGGAGCAGAAGGCCTTGGCTGCACACACCCTGGAGCTGCGGAACCAGAGGCTGCAGGAGGTGTACCGGAAGCAGCGAGAGGCTGTCAGTGTCAAGGCCATCCCTGTGGTCTCCCAGAGAAGTCCTGGCATTGTCACCTTTGTTCCCATACATTCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027392:ENSRNOT00000036178:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=NA C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]