HsaINT1006595 @ hg38
Intron Retention
Gene
ENSG00000260220 | CCDC187
Description
coiled-coil domain containing 187 [Source:HGNC Symbol;Acc:HGNC:30942]
Coordinates
chr9:136290486-136292295:-
Coord C1 exon
chr9:136292161-136292295
Coord A exon
chr9:136291646-136292160
Coord C2 exon
chr9:136290486-136291645
Length
515 bp
Sequences
Splice sites
5' ss Seq
TAGGTACCT
5' ss Score
4.67
3' ss Seq
TGACACTCCTGTCTTTGCAGGAG
3' ss Score
9.61
Exon sequences
Seq C1 exon
ATTCGGAGCTGGTTGGTGTTTACGCCTGGAGAAAGGGACAAGCTCTGGTGAGGTCGCTGCTTGGGCCCCCTCCCGTCCTCCGCAGGCACCATAGCAAGGATCCCTCGAGAGACCCGGCTCTCACCGTGGACTTAG
Seq A exon
GTACCTGTGCCTCTGCCATGGGCTCTGTCCTGCTCTGCTGTGGCATCTGGGGGCGGGCACAGAGAAGGAGACACCCAGGCTCCAGGCCGCCTGGAAGGAAGAGGTGTTGGCGCCTCTCACAGCAGCCTGCAAACACCCTCCAAACCTGCCACCCATTCAACTGGGGACTTTGGGCAATAAGTGTTTTCAAAGCCTGAGAAAAGGGTTTCTGGCCCTGGGAGGCTCCATCGCCAGTTCCCGGGGCAGGCATGCTGCCGAGGCTCTCTCCTGGCAGGAAGGCAGGATGGGAGCCGGCAGGGGCTCCCCAGACACAGGCACACCTGTGCTTGGCTACTGTGTGCAGAGCGGTGGCTCATCACACAGGCGTGGTGCCCACCCTCAGAGGGCTTCTGCCCAGCAGGGGCCCGAGGGCCTCCTCACCGCCCCCACACTCCTTGCCTCCAGCCCGGATGGAGGAGCTGGCTTTGCTCTCCCCTCCGCTCCCCTCCTCACCCCTGACACTCCTGTCTTTGCAG
Seq C2 exon
GAGACAGCGAGAAAGTCATAGCTGCCAAGTGCTCACCGGTTTGTGCCCAGTTGCCCGATGCCACCTCCGCCTACAGTGACCAGCAGGTGTCTGGGAACACACCCAGCCTGGCTTCCTTCGACCAGCCAGCGACCATACAGACGGCCATGGCCATCCTACAAGACCTGCGCCAGCAAATCCAGGCTGGGCTGGAGCTGGCCCAGGCCCGCAAGGGAGGGCAAGAGCTCGGGCCATCAAAGCGGAGGCTGCAGGACGTGGCAGGGAGGGGCTGCTGCAGGGACCCCAATGCCCAGAGCTCCTTCTCTAAGAGTCCCTGGGCCATGACAGAGAGGAAGCATTCCTCTTTAGAGAGGGCTAGGAGTGTCCACACCTGGGAGCCCTGGAGCTCCTCCACTGCACGGGAGTCCTGTCCGCAGAGGGCCTGGGGGGCCCAAGGACAGGACCGCTCCTTCCAGAGGCCGGAGAGTCCCCATGAGAGGTTGGGCCACTTCTCCCAGAGGCCCTGGAGTGCACTGGCTGGGCAGGCCTGCAGTCCGCAGAGGGCCTGGGGGGCCCAAAGACAGGGCCCCTCCTCCCAGAGGCCTGGGAGCCCCCCTGAAAAGCGGAGCCCCTTCCCCCAGCAGCCCTGGAGTGCTGTAGCCACACAGCCCTGTCCACGGAGGGCCTGGACTGCCTGTGAAACCTGGGAGGACCCTGGCCCCAGACTGCGGAACCCTCTGGAAAGGCCCAGTCCTCCAGCCCAGCGGCCCTGGAGCAGCTCCGGCGTGCAGAGGGCCGGCCCCCAGGGCAAGGGCAGAGGCATCGGCTCCCCCGTCTCGGCTGCCAAGCATGCCCTGCCAAGGCCCACCGGGAGCTTCCCTCAGAACCCACTTGGGAAGGAGAAGGACACGCTGCGGCCCTGCCCCAGGTCCCGGGGGCTCCTGGGACCCTCGCACAGCTCTGAGTCCTTGCGGGAGTTCATGCGCCAGAAGGCGCAGGCCCGGCGGCGGCAGGCCCTGGAGGAGAAGGCCTCGGCCCTGCGCACACGGGAGCTGAGGAGCCGGAGGCTGCAGGAGGTCTACCGGCAGCAGAGGGAGGCCGTCCTCGGCAGGGCGGTCCCCGTGGTCTCCCGGACCACCCCTGGCATCGTGACCTTTGTCCCCAGTTCTGCACAGTCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260220:ENST00000569961:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=NA C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGGATCCCTCGAGAGAC
R:
AGAGAAGGAGCTCTGGGCATT
Band lengths:
348-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains