BtaINT0005159 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 2, subfamily c (LOC511498), mRNA. [Source:RefSeq mRNA;Acc:NM_001075520]
Coordinates
chr26:20891218-20893404:-
Coord C1 exon
chr26:20893263-20893404
Coord A exon
chr26:20891406-20893262
Coord C2 exon
chr26:20891218-20891405
Length
1857 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CATGATTCATGTCTCTGCAGCCA
3' ss Score
7.83
Exon sequences
Seq C1 exon
GAGAAACAGAACCCAGAGTCTCAATTTCACTTGGAAAACTTAGCAACCTGTGGATCAAATCTGTTTTCAGCAGGAGTAGAGACAACCACTGCCACCCTGAGTTACGGGTTCCTGCTCCTAATGAAATACCCTGAGGTTCAAG
Seq A exon
GTACAGCAAATATCTTAGGTATTTATTTAGGATAAAATAGGAGCTGCTGGCACTCGTGAAGGTGGGAAGGTACTACAGTCTGTGACAACTTCTCTTTCTCTGGACAGCTTTGGCAAGCATCATGCATAGGGCCACCCATGTGGTTTGGTTTTACAGATCAAAATTCTGTCAAATGATGCTGATAAGGAAGACAGACCTTTACGAATCAAAGACTTTTTAAGTTTAAAAGCAGAGGAGCTTCTGAATCCCAGCTCTTCTATATATGATGTAATGTTGAAGAGTCAGTCCAATTTAGATGAGGGATGCATGGGTTCCTATTTTGGACTCTCATTCTCAGCCGCCAAAACCTGACTGTGTGACCTCAAACAAGTTATTTCACTTCACAGGCCTTTGTTTTTTCATCTTGAAAATGGATCAGTCTCCCCAAAGGGGATTTTTAGCTCCAATATAATTTAAAATTCAAAAATGAAATTGTACTAGCTTGATTTTCTCAATCATGTTCTCAGAGCACAGGTCTTAGAAAGCCAGTGTTTATTTTGTTCAACAAAATGGTGTTTGCTGTTCCCACAAAATGTTAGGAGACTGGATGATACTGATAGAGGAGATGCTCCCACTAGAGTTAGGATTGAACATTTTCCCTCTGCAGCTGCTTTGCCAGGAATCTGGGGTAAACTTTAATCCCTGCACAGAGGTCATCTCCTCACCTGTACAGGAGGACAAACCAGTTCAGGCAGGAGGCCAAAGACATACCTAATGCAGCTTTTATGTTTCCTGAAGCGAAATCTCTGGTCTTTGCAGCAATATAAAAAATAGAAATTCTATGGCTGCTATCAAAAAGTCTACAAACGATAAATGCTGGAGAGGATGCAGAGAAAAGGGAAACCTCTTACACTGTTGGTGGGAATGCAAACTAGTACAGCCACTATGGAGAACAGTGTGGAGATTCCTTAAAAAATTGGAAATAGAACTGCCATCCGACCCAGCAACCCAATGCTGGGGATACATACTGAGGAAACCAGAATTGAAAGAGACACGTGTACCTCAATGTTCATCACAGCACTGTTTACAATAGCCAAGACATGGAAACAACCTAGATGTCCATCGGAAAATGAATGGATAAGAAAGCTGTGGTACATATACACAATGGAATATTACTCAGCTATTAAAAAGAATGCATTTGAATCAGTTCTAATGAGGTGGATGAAACTGGAGTCTATTATACAGAGTGAAGTAAGTTAGAAAGAAAAACACCAATACAGTATATTAACGCATATATATGGAATTTAGAAAGATGGTACAATGACCCTATATGCGAGACAGCAAAACAGACACAAGTGTAAAGAACAGACTTTTGGACTCTGTGGGAGAAGGCGAGGGTGGGATGATTTGAGAGAATAGCATTGAAATATGTATATTACCATATGTGAAATAGATCACCAGTCCAGGTTTGATGCATGAGGCAGGGTGCTCAGGGCCAGAGCACTGGGATGACCCTGAGGGATGGGATTGGGAGGGAGGTGGGAGGGGGTTCAGGATGGGGAACACATGTACACCCATGGCTGATTCATGTCAATGTATGGCAAAAACCACTACAATATTGTAAAGTAATTAGCCTCCAATTAAAATAAATAAATTAATTTAAAAAAGAATATTCTGAGAATAAAGATTTTATACTAAAATTAAAAAAGAAAAAAGAAAAAATAGAAATTCTATGAAGAACAGAGCTGTGAGTTGTTTAGCAACATGTCTTTGACCTTGGGAGCCTTTTCCAGGCCACTTTCTTTACATGTTGTAAGCATTTCCAAGTATCCAGGGAACATATCTCTTAAGCAGGATTCATGATTCATGTCTCTGCAG
Seq C2 exon
CCAAAGTTCATGAAGAAATTGACCGTGTGATTGGACGCACCCGAAGTCCCTGCATGAAGGACAAGATGAAGCTGCCCTATACAGAGGCTGTGTTGCATGAGATACAAAGATACGTCACCCTCGTTCCTTCTAACTTACCCCATGCTGTGGTCCAGGACACGAAATTCAGACAATATGTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023939:ENSBTAT00000032930:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAACAGAACCCAGAGTCTCA
R:
ATATTGTCTGAATTTCGTGTCCTGGA
Band lengths:
318-2175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]