RnoINT0044318 @ rn6
Intron Retention
Gene
ENSRNOG00000013291 | Cyp2c23
Description
cytochrome P450, family 2, subfamily c, polypeptide 23 [Source:RGD Symbol;Acc:620370]
Coordinates
chr1:263787050-263788573:-
Coord C1 exon
chr1:263788432-263788573
Coord A exon
chr1:263787238-263788431
Coord C2 exon
chr1:263787050-263787237
Length
1194 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
CCCACTCTGTGTTTCTGCAGCCA
3' ss Score
9.95
Exon sequences
Seq C1 exon
GAGAAGGACAACCTGAAGTCTGAGTTCCATCTGGAGAACTTGGCTGTCTGTGGGTCTAACTTGTTTACGGCAGGCACCGAGACAACCAGCACCACCCTGAGATTCGGGCTCCTGCTCCTTATGAAGTATCCAGAGGTGCAAG
Seq A exon
GTACGATGGGTGAGGGGGGGGGGTGGGGGCTGCCGCCTCGGGAGAAGAACCTTGCCTTTGAGGAGCAGAATTACATCCCCTGGTGCTGCTAGGGAAGAGAGGCTCTTAGGAACTAAAAGACTTTCATTTAAATTCCAAAATAGAACTGACGGATCTCAAACCTCCTATGTTAGAAAAAAAAAAAAAAGACAAAAATGGAGCTGTAACTGAGCAAAAGATGTAATGTGTTCCATGCTGAAACCACTTCCGGACCTGCCAACACAGGGCTGTGTCTGAGTTCTTTCATCTTGTGGGCTTCCACCTTGAAAATGCGCCAAACCCCTTAAGGGGGATTCTTAGCTCTGAATTTTTCTTTTTCTTTTTTTTTTAGCATATACTAATTACATAGAATGATGGATTCCATTATGCCTTTACATGCATGTATACAATGTATATAGATCCTATTCATTTCACATGCATCTATCATGTATACAATGTATATAGATCCCATTCATTTTACATGCATGTATACAATGTATATGGGTCCTATTGGTTTTACTTGCCTGTATACAATGTACACAGATCTGATTCACTTCTCCCACTTCCCAACTCCTGTTGATCCCGGAACAGGTGAGGGGTTCCTGACAGGAGAATGGGTGGCCTACCGCAGCTACACTACTGAAGGAAATTCTCCCTCCTACAGCAACCACGAACTACTTTTGGATCCTCAGTTGGGTCTTAATCATGCATTTAAAGTGAAACCCAAAGGATAATCTCAAGGCATTTCTCAGAGCGCAGGCTGTAGGAAGTCCGTGTTTACTGCTCAGCAAACAGTTGCAGCTCCCGCAGGAGCTGTGGGAAAGTGGGAGAAGCTGAGAAAGATGAGCCCAGCAGAATCAGGGTCAAACATCTTCCCTCTATGGCTGATTTGCTGGGAGTCACGTGATTTGCTGGGAGTCACGTGATCAGTTGGGACTCCCTGGGTCTTTTCCCAACCACAATGGCGGTTGTGCACATTCCTGACCCAACCTTTGTTTCCAACAGCCACATTTTAGGGGTTTGCAGCAAAACAGTGTTGTCTAGCAGCACCCCTTTACTAGCCGCCATAATCCCGCTCACCAACGCCTTCTCCAGGCCACTTTCTATCACTCCTTGCAAGTATTTCTAGGTCTCCTGAGAATATCGGCCTGAGCTGCCCACTCTGTGTTTCTGCAG
Seq C2 exon
CCAAAGTTCATGAGGAACTTGACCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCTTATACCGATGCTGTATTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCCAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGAGACTATGTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013291:ENSRNOT00000017840:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAACCTGAAGTCTGAGT
R:
CTTGGGGATGACATAGTCTCTGA
Band lengths:
326-1520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]