DreINT0054237 @ danRer10
Intron Retention
Gene
ENSDARG00000013524 | cyp2ae1
Description
cytochrome P450, family 2, subfamily AE, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-090312-107]
Coordinates
chr23:42694628-42695075:+
Coord C1 exon
chr23:42694628-42694766
Coord A exon
chr23:42694767-42694887
Coord C2 exon
chr23:42694888-42695075
Length
121 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
CTGTGTCTTCGTTTTCTCAGAGA
3' ss Score
9.81
Exon sequences
Seq C1 exon
TGTAAAGACAGTGATGCCGAGTTCACGGAGGAGAACCTGATGTTCTGTGTGGTGGATCTGTTTGGAGCAGGAACAGAAACCACTTCCAACACTCTGAGATGGGCTTTAGCTTTCATGGTCAAATATCCTGATGTTCAAG
Seq A exon
GTGGGATATTGAACACTTAAGAAATACACAAATACACGCACTCTTTAGAACAATTGTTATTGCGAAAAGCGCTATATGATTAAATCTGAAATGAATATCTTCTGTGTCTTCGTTTTCTCAG
Seq C2 exon
AGAAGGTGCAGTCAGAGATCGATCAGGTGATTGGACAGACCCGCCAACCACTGATGGATGACCGGACAAATCTGCCGTACACCTATGCCGTGATCCATGAAATTCAGAGGTTTGCCAACATTGTTACCTTTACGCCTCCCAGAGTGGCCAACAAGGACACGACAGTGGGAGGACAGCTCATCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013524:ENSDART00000035654:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
NA
C2:
PF0006717=p450=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGATCTGTTTGGAGCAGG
R:
CCACTGTCGTGTCCTTGTTGG
Band lengths:
257-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]