MmuINT0044875 @ mm9
Intron Retention
Gene
ENSMUSG00000025197 | Cyp2c44
Description
cytochrome P450, family 2, subfamily c, polypeptide 44 [Source:MGI Symbol;Acc:MGI:1888897]
Coordinates
chr19:44086773-44088207:-
Coord C1 exon
chr19:44088066-44088207
Coord A exon
chr19:44086961-44088065
Coord C2 exon
chr19:44086773-44086960
Length
1105 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
CCCTCACCGTGTCTCTGCAGCCA
3' ss Score
9.69
Exon sequences
Seq C1 exon
GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG
Seq A exon
GTACCCCGAGTGAAGAAGGAGGTGGGGGCTACTGTGCTTCATGGGAAGGGCCTTGTCTTTGAGGGACAGAATTATGTCCCATGGTGCTGCTAAGGAAGAGAGGCATTTAGGAACATTTAGATTTAGATTCAAAAGTAGAACGTATGGATCTCAAACCTCATATGTTAGAAAAAGAGACAAAAATTTAGCTGCAACTGAGCAGAAGATGTTAAGGGGTTCCATGCTGAAACCACTCGAGGACCTGCCAACACCGGGCTGGGTGACCGCACATGAGTTCTTTCATCTTGTGGGCTTCTATTTCACGCCTTAAAAATGCACCAAACCCCTCAAGGGGGATTCTTAGCTCTGGCAGAATTTTTCTTTTTCTTAGCATATACTAATTGCATACAATGATGGGTTTAGTTATGCCTTTACATGCATGTAAACAATGTATATAGCTCCTATTCATTTTACATGCAAGTATATCGTGTACATAGATCCTATCCACGTCTCCCACTTCCCACTCCAGTTGATCCGGGAACAGGGGAAGGACTACTGAAGGGAACTAGGTGAGGGGTTTCTAACAGGAGAATGGGTGGCCTACCAGCAGCTACACCACTGAAGGCAATTCTTCCTCCTACCGCAGTCACTAACTGCTTATAGATCACTAAGTGGGTCTTAATCATGAAGTTAAAACTGAAATTCCAAGGATAATCTCAAGCCATTTCTCAGAGCACAAGCTGTAGGAAGTCAGGATTTACTGTTCCACAAAACGCAGTTCCCACGGGAGGTGTGGGAAAGTGCTAGAAGCTGATAAACGTGTGCCCGGCAGAATAAGGATCTAACATTTTCCCTCTATGGTTGATTTGCCGGGAATCACATGATCAGTTGGGCCTGCCTGGGTCCTGTCCTAACCACAATGGCAGTCCTGCACATTCCTGCCCCAACCTTTGTTTCCAATAGCCACATCTTTGGGATTTGCAGCAAAAGGGGACTTTGAACCCCCCACCCAACCCCGCTCACCCCTTACCAAAGCCTTCTCTAGGTCACTTTCTATCACTCTTTGCAAGTATTTCCAGGTCTCCTGGGAATACAGGCCTGAGGAACCCTCACCGTGTCTCTGCAG
Seq C2 exon
CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACACTATGTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025197-Cyp2c44:NM_001167905:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAACACAACCTGAAATCTGAT
R:
ATAGTGTCTGAATTTTGTGTCCTGGA
Band lengths:
318-1423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: