BtaINT0005470 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035042]
Coordinates
chr7:8550500-8551113:+
Coord C1 exon
chr7:8550500-8550534
Coord A exon
chr7:8550535-8550884
Coord C2 exon
chr7:8550885-8551113
Length
350 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
3' ss Seq
GCCTCTTCCTTCATCCTCAGGAT
3' ss Score
11.33
Exon sequences
Seq C1 exon
GGAATTTGTGTGAGACAAGCCGCTCTTGACAGAAG
Seq A exon
GTGCCAGGCTGGGGGTCAAAAGGCTGGGGGTCCTGGCCCAGGGTAGGGAAGGCTGCTACCCAAGGCAGGGTGGCTCCAGGGAAAGAACTGGCCAGGGAGATGAGGGAATACCAGTGGGTAACTAACACACATTCTTTGTGCATGTTTGTATGTGTCTTTCTGTCTGTATTTCCCTATTCCTCTGAATTTCTGTGTTTCTCCCTCCCCTCTCCCAGTCCCTGTCTGCCTGTCTCTGAGCCCTTCTTGCCCATCCCAGCACTCCCCATCCCTGTCCTTCACTCCCTTGCTCCTCTCCCTCTATTTGTCTTTGCCTCACAACTCACCATCACTGCCTCTTCCTTCATCCTCAG
Seq C2 exon
GATTCAGCCTCCACTCTGACTGCCCCACAGGATGCTGGAGCTGAGCCTGTCCTGGCTGGGACTCGGGCCAGTGGCAGCCTCCCCGTGGCTGCTGCTGCTGTTCACTGGGGCCTCCTGGCTCCTGGCCCGCATTCTGGCCTGGACCTACACCTTCTACAACAACTCTCGTCGCCTCCAGTGTTTCCCACAGCCCCCAAAACGCAACTGGTTCTTGGGTCACCTAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025748:ENSBTAT00000036366:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(3.0=21.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTGTGTGAGACAAGCCGC
R:
CAGGCCTAGGTGACCCAAGAA
Band lengths:
262-612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]