MmuINT0045381 @ mm10
Intron Retention
Gene
ENSMUSG00000073424 | Cyp4f15
Description
cytochrome P450, family 4, subfamily f, polypeptide 15 [Source:MGI Symbol;Acc:MGI:2146921]
Coordinates
chr17:32685627-32686257:+
Coord C1 exon
chr17:32685627-32685811
Coord A exon
chr17:32685812-32686058
Coord C2 exon
chr17:32686059-32686257
Length
247 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTGTCCATTTGCCCCACAGGAT
3' ss Score
11.37
Exon sequences
Seq C1 exon
GAACAAAGAAACTCTAAAGGAAGGAGAACCGTGGGAAACTCACTGTTCCTGAGAGAAGGTGCCTGGCTAAGAGTAGGTTAAAGAGAACTCTAAGCCTGAACCTGGCTGCTTATTTCTAGATAACCAGCTATCTGAAGCCAAAAAGTCAGAGTGATCCTGTTGGCTTCAGACATGGGGTTTTTCAG
Seq A exon
GTAACATCTCCTGGCAGTTTCATTCAGGAATTTTGGGTCTCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCCTCCTCCTCCTCCTCTACCTCCACCTCCTCTTCCTCCATATTACTGCCTATTTCCACCCCATGGATCTCTCCTCCTACAAACAGCCTTCATTATTCATATCCCTGGTCCATTATGCCTGATGGCCCCAACCTTCTTCCAACCTCCCAGTCTCACTGTCTGTCCATTTGCCCCACAG
Seq C2 exon
GATGCCACAGTTGGACCTGTCTTGGCTGGGACTGAGGCTGGAGGCATCCTCACCATGGCTGCTTTTGCTGCTGATCGGAGCTTCCTGGCTCTTGGCCCGTGTCCTGACTCAGACCTATATCTTCTACAGAACATATCATCATCTTTGTGATTTCCCTCAACCCCCCAAATGGAATTGGTTCTTGGGTCACCTAGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073424:ENSMUST00000168171:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006717=p450=PU(3.0=20.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCCTGGCTAAGAGTAGG
R:
GGGGGTTGAGGGAAATCACAA
Band lengths:
294-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types