HsaINT0044464 @ hg19
Intron Retention
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450, family 4, subfamily F, polypeptide 12 [Source:HGNC Symbol;Acc:18857]
Coordinates
chr19:15783886-15784537:+
Coord C1 exon
chr19:15783886-15783945
Coord A exon
chr19:15783946-15784338
Coord C2 exon
chr19:15784339-15784537
Length
393 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
GCATCCCCTCTGCCCTGCAGGAT
3' ss Score
8.79
Exon sequences
Seq C1 exon
AAAGACCTCCCAGCAGAAGAGGAGAAGAGGTTGTGTGGGACAAGCTGCTCCCGACAGAAG
Seq A exon
GTACCAGGCTGGGGGTGGCAGGGCTGGAAGGTCCTGGCCTGGGATGAAGAGGGGACTGCCTAAGGCTGGGGTGGCTCCAAGATGCTGGCATGGGAAACTGGGGGTTTCCTGGTAACTGGACTCCTAGCAAACTCCCAAGGATTCAGGTGGGGCCCTTCTGGACTCTAATCGGCCCATCTCTTTCCCTTTCTGTGTGGTTACCAGGTTACTGGAGGCCACTTAGTTGTTGGTTTTGGTTGGGACTTTCTGGACTTCAGATCTCAGCCCTCGTTTACTCACCCCTGAGCCCTCCCTGCCCTGCCCCCAGCAGTTCCTGACTTCGCCCCTATACACTGTCCCCGGAGCTCTTCCCTGGGCCTCAGGTCCTCACCCTGCATCCCCTCTGCCCTGCAG
Seq C2 exon
GATGTCGCTGCTGAGCCTGCCCTGGCTGGGCCTCAGACCGGTGGCAACGTCCCCATGGCTACTCCTGCTGCTGGTTGTGGGCTCCTGGCTACTCGCCCGCATCCTGGCTTGGACCTATGCCTTCTATAACAACTGCCGCCGGCTCCAGTGTTTCCCACAGCCCCCAAAACGGAACTGGTTTTGGGGTCACCTGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204-CYP4F12:NM_023944:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(11.0=21.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCTCCCAGCAGAAGAGG
R:
GCCCAGGTGACCCCAAAAC
Band lengths:
255-648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)