HsaINT0044464 @ hg38
Intron Retention
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450 family 4 subfamily F member 12 [Source:HGNC Symbol;Acc:HGNC:18857]
Coordinates
chr19:15672757-15673727:+
Coord C1 exon
chr19:15672757-15673135
Coord A exon
chr19:15673136-15673528
Coord C2 exon
chr19:15673529-15673727
Length
393 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
GCATCCCCTCTGCCCTGCAGGAT
3' ss Score
8.79
Exon sequences
Seq C1 exon
GCTGCCAACTGTCATGATAAGTATATGCTTTTATCTGAACACCCTTGTCTTGGAAGGGCAGGGTGGAGGTAAACTTGGGGTTCAGAGTCCCCTCTAACCACCCTCCAACTTCCCCTGCAAACTCCCAAGAAGGTACTGAGACCTGAGAATTCAGTGCTCGTGCTGGGGCACCCTGAGCTGCACCCAGTGGGCCCAACCCCAGGTTTTGGCTGGCTGCCCAGGCACGGAAGACACACCCAGGCTGTGGGGATTGGCTGCCTCAGCCCAGCCCAGCCCAGCCCCGCCTCCTACGGCCTTCCCTAGATCAGGGGCCAGGGCCAAAGACCTCCCAGCAGAAGAGGAGAAGAGGTTGTGTGGGACAAGCTGCTCCCGACAGAAG
Seq A exon
GTACCAGGCTGGGGGTGGCAGGGCTGGAAGGTCCTGGCCTGGGATGAAGAGGGGACTGCCTAAGGCTGGGGTGGCTCCAAGATGCTGGCATGGGAAACTGGGGGTTTCCTGGTAACTGGACTCCTAGCAAACTCCCAAGGATTCAGGTGGGGCCCTTCTGGACTCTAATCGGCCCATCTCTTTCCCTTTCTGTGTGGTTACCAGGTTACTGGAGGCCACTTAGTTGTTGGTTTTGGTTGGGACTTTCTGGACTTCAGATCTCAGCCCTCGTTTACTCACCCCTGAGCCCTCCCTGCCCTGCCCCCAGCAGTTCCTGACTTCGCCCCTATACACTGTCCCCGGAGCTCTTCCCTGGGCCTCAGGTCCTCACCCTGCATCCCCTCTGCCCTGCAG
Seq C2 exon
GATGTCGCTGCTGAGCCTGCCCTGGCTGGGCCTCAGACCGGTGGCAACGTCCCCATGGCTACTCCTGCTGCTGGTTGTGGGCTCCTGGCTACTCGCCCGCATCCTGGCTTGGACCTATGCCTTCTATAACAACTGCCGCCGGCTCCAGTGTTTCCCACAGCCCCCAAAACGGAACTGGTTTTGGGGTCACCTGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204:ENST00000550308:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(11.1=21.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCAAACTCCCAAGAAGG
R:
CACAACCAGCAGCAGGAGTAG
Band lengths:
346-739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development