RnoINT0044590 @ rn6
Intron Retention
Gene
ENSRNOG00000032895 | Cyp4f4
Description
cytochrome P450, family 4, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:708363]
Coordinates
chr7:14891001-14891657:+
Coord C1 exon
chr7:14891001-14891200
Coord A exon
chr7:14891201-14891458
Coord C2 exon
chr7:14891459-14891657
Length
258 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTGTCCATCTGCCCCACAGGAT
3' ss Score
10.71
Exon sequences
Seq C1 exon
AGCAGAAGCCAGGAACAAAGAAACTCTGGAGGAGGGAGAACTGTGGGAAACTCACTGCTCCTGAGAGAAGGTGGCTGCTTAAGACCACCCATACTAAGTTAGACAGAGCACTGAACCTGGTTGCTTATTTCTCCATAACCAACTCTCTGAAGCCAAACAGCCAGAGTGATCCTGTTGGCTTCAGACAGGGGGGTTTCCAG
Seq A exon
GTAACATCTCCTGCCAACCTCATCACTATTCAGGCATTTTGGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCATCCTCCTCCTTCTCCCCCCTCCTCCTTCCAACTTACTGCCTCTCTCCACCCCATAGATTACTCTTCCTAAAAACCAACCTTCATTATCACTTGTCCATTATTCCTGATGGCCCCAACCCTCTTCCAAACCTCTGAATCTCACTGTCTGTCCATCTGCCCCACAG
Seq C2 exon
GATGCCACAGTTGGACCTGTCCTGGCTGGGACTGAGGCTGGAGACATCCTTACCATGGCTGCTTTTGCTGCTGATCGGAGCTTCCTGGCTCTTGGTCCGTGTCTTGACTCAGACCTATATCTTCTACAGAACATATCAACATCTTTGTGATTTCCCTCAACCACCCAAATGGAATTGGTTCTTGGGTCACCTGGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032895:ENSRNOT00000041034:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(3.0=21.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGCTGCTTAAGACCAC
R:
TCCATTTGGGTGGTTGAGGGA
Band lengths:
306-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]