BtaINT0005806 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPG1]
Coordinates
chr6:14171357-14174561:+
Coord C1 exon
chr6:14171357-14171543
Coord A exon
chr6:14171544-14174475
Coord C2 exon
chr6:14174476-14174561
Length
2932 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
TTTGTCGTTTTTCATTTTAGGTG
3' ss Score
12.55
Exon sequences
Seq C1 exon
GAAGTTCGAAAGTGGGTGTTGTGCAATGAGCAAGTTAAAAGAGCTGTTTCTACTCGGGAGTTTCTGGGGAGTGAGGGTAGATAGGCTGGAGTTTTGAGCTCCAGGTGCTGTCACTGATTTTGATGCGACGGGCGAAGGAGTTTGCTCCGCCAGACGGAGTCCGGTAAGGAAGCTGTGTGGAGACAAG
Seq A exon
GTTGGTTCACGGCTTGCCCTAGCAGCTTGTAAATAATTCGTGCTTCGTCTTTACCACCTTCCCCCAACTCCTGCTGTGCAGTTCCGGTATCCGTGTGAGAACCCGGGATGGTTTTGCTGTTTATTTTTAGGACTGACAAAGGGTCTCTTCTTCATTGTCATCTGGTTACCCAAGGTAGTGATAATTAGAACGTTGGCAAATGAAATGTGAGCATCTTTTGGTTGTCTGAACTGGACGGTTTCTTAAAAGCCTCTTGGGCTCGTGATTCTTAAATTTTTAAATCTGTGAACCATTTAGGGATTCGAGAGATCCTGCTTGTTCCAAAAGAAAAGGACCAAAAACATCTCATCGTACTTAGTAAGAACAGCTCATATTTTAGTGATAACACCGAATTTTATACATAAATCTAAAAAACAGCACACTAATGTATGTGTGAAGATATGTATGTAATTCTGTACTAAATTATCACAAAACATCTAATCTCTCCTCTTTTTTTGAAGTGTAATCCTTTGAAGTAATCTACCACTTACAAGAATTTGGACCTTCTCAATACCTTTTACATTGCAAATCCCTCAAGTAGTATTTCTAATTTAGGAAAACAATGGGGGAATTTATTTTGCAATTGGTAAACAGCATGTAAGTAATCCTAAAGAAGTAAATACTGGATTTCTAACCTGTAAATTGTGATGGTAATAACAACTTTTCAGGATTATGAGACTGATAAATATTTTATGTAAAGAACCCAGTCCCATTCTTGCCTGATACAGTAGGTTTTACATAGTCACATAATGTAGTTTTTGTGAATGGGAACACCAGAATTTAGACTACTTAGTTTTGAATTCTGAATCTGCCATTTATTTACTTCATGATCTTAGGCAAATTACATACTTATTATGTACCTCACTTCCTATTTTTGTAAAATGAGTGTAAAAAATAGCATCTGTACTATAAGGTGTAAATATTTAAAGCATTTTAACAGTGTCTATCATATAATTTGCACTGAATAAATAATAGCTGTTATTAAAGCGATCTAATGTTAACTGCTACATGCCAAGCATTGTGTTGACACTATGTAGTCTTATCTACATATATAGGAAGTCTAACCCATTCACTGGCTAGAAGCAAGTTGCTGTAAAAGCAGCAGTGAGCGATGTGTTTCTTTGGACCTCTGTTACCTTCTTGGCATTCACTAGGCATCTAGCAATCCTGTAAGCTGGAGGGGAGGGATTAGGATATGGAGTTATATTTCTGAAAGGCAATGCCTCTGTAGGTCTGGTCCTGTGCTGTGAACTATGTCATGGGACAAGTATTCATATCTCATTTGTGTACCGTTTGCCCTGCCCTTTATCCATTTGGCAGCCAGAGCAATCTTTGTAAAACCCAAGTCAGATCATGTAATCTTATTCTTAAAATTCTGCCTTGGCCTCCTACTGTCTTTTTAAAAAGTCCAAACAACTTAGCATAAAATAGAATGCCCTTCGCATCCTGTTATTGCTCACTTTTTCAGTCTTATCTCTCACAACTCACTATCTTACACTTGATTATAAACTAAAGTTCCTTGATTATGCCTTGCTAAGTCTTCCACAGGTCTTTTGTACATGTTATTCTTATTTGGAAATACCCTCCTTGGAATTTTTCCTTAGTTAATGATTATTTCGGTTTACAGTATATGCATTATGTCTTTCAGGAAACCTTGTTTGATGCCCTAGACTGAGTTGGGTGCCCCTCCAGTGCTTTTCCTTCCATATTTTTTGTAATTACTGTTTATTACCCTGCTATACTGAAAATTCCTTGAGACTAGGAGCAGTATTTTGTTCATTTTAGTATCTTGGCCTAGTGCTATGTACACATAGTACATAGCACACAGTAAGTACTAAATATATGTGATTTATAAATACCATGTAGGTGGCCTATTTTTATACGTTTTGTATGTAGAAAGGATGACTTTAATCCAGAATTGCAAATCATTGCTTTATTGGATACCTGTAGGTTTCAAACTTGAGTGTGTATCACTGTCACCTCCAGTGCTTTTTAAATTACAGGTACTGGACCCCAGTGCCAGCCTTTATGATTTAATAGGTCAAGACTCAAGAATTTGAATTTCTAACTAGCTCCCAGGTGTTGCTAATGCTATTGGCCCAGAGATCTAAGGCCGTGCTTAAAAATAATAATACTTTCTTTGGCATCTCTGTTTACTTCTTCAGTTCATCATCAGTGATTTTAGATTACCAGATTTGCCCACAATAACAATTTTATCCAATAGCAGGGGATAAGTATAATTGCAACTCATTGCAATTATATTGAAAAAGTTTTTCCTTGGAGATGTATTATAATGTATATTTGGTTTTAGATACTATGTTCCATTGACTTTGAAAATGTAAAAGGAAAAATTTGAAATGCAAGGGGGCCATCTTGTGGTGATCATAGTAATTCAGAGAATTTTAGAAATTGAAGCTCTTTCTCAGAGAAACCCAGCTTCTGGGGCAGGGGAAAATCAATTTTCTGATACATATTATGGCACCTGGAAAAACGTCTGCAGCCTACTCATTATTTTATATATTTTACCTAGTTTTCTCTTTACTTGGGAATTTCTTTTTCCACAGTGTGGTGTCACTATTCTGTTGGGTCCTCAGTGGCAGGTAATTTGATTACATCCGTGGGTTGGTTTTTTTTTTTTTTTTTCTTTTGGCTTACCCTGGGAGCTTGTGGGATCTTAGTTCCCTGACCAGTGAGTCATACCAGCCCTTTGCGGTGAAAGCACAGAGTGCAAGCCACTGGACTGCCAGGGAATTCCCTACATGTGTGTTTCCCTTGGTGATGACATGGTCTCAACACTTAAACACCTCTCTCTGGTCCAGAGTTTGTGGGGAAAGATTGTAGTTGATACTTATTCTGTTCATCAGGGTTGAATATTTGTCGTTTTTCATTTTAG
Seq C2 exon
GTGCTATAAATAGTTGAATGACTACTGATTATTTTCTGGACCTGACTGTAATATCAGAAGAAATAATGGAAAGCCAAGAATTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026936:ENSBTAT00000049376:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF103824=DUF2439=PU(5.0=57.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]