MmuINT0003934 @ mm10
Intron Retention
Gene
ENSMUSG00000051278 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127553502-127555385:+
Coord C1 exon
chr3:127553502-127553552
Coord A exon
chr3:127553553-127555295
Coord C2 exon
chr3:127555296-127555385
Length
1743 bp
Sequences
Splice sites
5' ss Seq
TAGGCAAGA
5' ss Score
1.39
3' ss Seq
TTTGCTGTTTTTCATTTTAGAGG
3' ss Score
9.6
Exon sequences
Seq C1 exon
GTTTATGTCATTGAGCCGGTGAAGTGGAGACTTTTCTCTCCCGTGTTCTAG
Seq A exon
GCAAGAAGGGTGGACAGACCGGGCGACTTGGCGCGGTTGGGAGAGCACTGGACACTGACTCGCCTCCACGGAAGCGACCCACGAGGCGCCGTTAGAGTGCCGGGTGAGGCGGTCACCATAGCGGCCCATCCCGGTTGTGGGTGTTTTAGGGGCTGACATAGGACCAAGGGGGCCATTATTATTTAGTGATACAAAACCTTGAAGTGTCAAGGCTTGGCAAGTGAAGCTATGTTTCTTTTAGGGATCTGTACTGTTCCTTGTGGTTTAGCAGGCCGTTCGTGGTTTGGAAACTTTCCTGGTTTGAGCGGTGCTGTTCTGAGCTATTGTGACAGTTTTTCATCACTGCAGAGGGCCAGATAGAAACTGTTGTTGGGCTCCAGAGCTGGACTTCCTAACGTAATAGATCAAGAATAGGACCTAAAAGAATAGGACCTAAAATGTTCATTGCTAACTAATTGTCAGGTCATGTCCCTGGAACCACTTGAAGATATGTGTGCTTATGTGTGCTGCTTTTGCATCTGTATTCAGTTCACCATCGACGATTTCAAGATTTCAAAATTTGACCTTATAGTTAACATGGTAGTTACAGTGGCTGCTGCAGCACTGTCCAAGAGATTTTTCTTCCTGGGTGTGGTGGCATATTGCTTGTAATATCCCAGCTATTTCCAGAGGCTAGGACGGGATTGTGCAATATGGTCAGATCCTATTTTAAACAAACATAAAGGACTGGATGCATGTAAGCACTATTACCTAGTTTACATATAGTCCCTTTTGTCAGCCCCTAGCACTGGGTAAAAGAAAGAACAAAATTTTCCTTGCAGAGGAATTATATATTGTATATTTGGCTCTAGGATGTTGTGCTATATTGACTAGGGTATATAGTCAACCCTCTGTACCTGTAATTTCTGGATCTGTATTCAGCCAGTTATAGATGGGAAATAGAAAAAAGTTGTTAGTACTGAGCATACAGATTTTTAAATTATCATTTTTATTTCTTCCTTTTAGACAGTGTCTATCTATGTAGTTAGTCCTGACTGTCCTGGAGCCCTATAGGTAGACAGGCAACCAGGCTGCCTTGAAGTCACAGATCCACCTGACTGTGCATCCTGTGCACTGGAATCAAAGTTGTGTTCCACCAAGTCAGGCTTGTTACCATTTCTTGAACAATGCAGTTTAATCACTGTTTGCATATCATTTACAACCTACTAGGTACAAGTAATCTAGAGATAACTTATTTATGTTAGAAAATATGTGCATGCTCCTATTATATGCGAAACAACTATGACGTTTTATATGTGAACTCAAGTGGCTGGCGCCGGATGTTAATATTTGTGGTCCTGAAACTAGTTCTTGGATAACTAGGGATTACGCTAGCAGGAAAAATTTAAGACACAAGGGGGCCATCTTGTGGTAAGTATAATGATTTTGAAAAATAAAATTGAAGTTGGGTTCTAAGGAGCAGTACATGTTGAAGGGAAAACAATCCATTTTCTGGTATATAGCAAGCCACTGGAGAGATGTTTACAGATTTCTAGTAACTATGAGTTTTACCTTTATTTTCCTGTGTGGTGTCACGCAGTTCTGTCCTCCATGACAGATACAGTTTTGTTTCTCTTGGTGGCTTCATAGTCTTGGAATTGTTTGGTTTCTGTCTCCAGTCAGGATTTATTGAAAAAGTTTGTACTTGATATTTATTCTTTTTATCAGGGTCGATTGACCATTCTTTGCTGTTTTTCATTTTAG
Seq C2 exon
AGGATATAAATGCTGACTAAAAACTGATTGTTTTCTGGACCTGACTAGTTTATAATCTCAGAAGACACAATGGAATGTCAAGAGTTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278:ENSMUST00000196141:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF103824=DUF2439=PU(5.0=57.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types