BtaINT0005812 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPG1]
Coordinates
chr6:14181191-14184228:+
Coord C1 exon
chr6:14181191-14181376
Coord A exon
chr6:14181377-14182046
Coord C2 exon
chr6:14182047-14184228
Length
670 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TAATTGTTTAATATTTTTAGGGT
3' ss Score
6.52
Exon sequences
Seq C1 exon
GTTAAACCTGGAGATGATTTAGAAAGTGATCGGTACTTAATCACAGTTGAGGAGGTTAAAGTTGCTGGAAGCACAGCTGTCAAGCAGGATGTCATTAAAGAAGCACCAGCATTAAATTCAAAGAGGTTTATGTCTTCTGGCCGATCCCTTGGGTGTCAGCCTGCTGGTTTAAAAAGGAAGTTCACT
Seq A exon
GTAAGTTTCTCTGTTGAAAATAATAAATCAGTATATATTTATAAAATCATTTCAAGAAGTAGTGAATTGCAAAGCTATTGTTCTTTATGATTAAAACAGTACTTCATAGTATAGGCTATGGTAGAAAAGACTTCCCTGGTGGCTCAGACAGTAAAGCGTCTGCCTACAATGTGGGAGACCTGGGTTCGATACCTGGGTTGGAAAGATCCTCTGGAGAAGGAAATGGCAACCCACTCCAGTACTTTTGCCTGAAAAATCCCACGGATGGAGGAGTGTGATAGGCTACAGTCCATGAGGTCGCAAAGAGTCAGACACGACTGAGCGACTTCACTTTACTTTCACTGTGGTAGAAAGGAAGTAAACTCTAATCTTAATACAAATGAGTGTTTGCATTTTAGCATAGCAAAATTTATCTTTTTTTTTTTTTTTTTTTGGCTATGCTGGGTCTTAGTTGTGGCATGTGGGATCTAGTTCCAGACCAGGGATCAAACCCAGGCCCCCTGCATTGGTATCGCAGAGTCTTAGCCACTGGACCTCCTTGGAAGTTCCCCAAAATTTATATCTTAATTATTACTTTATCTTGTAAAACATGCACATTCTTTTTTAGCCAGTTCATTTTATATTTTCTTTGTCATCTATAGAACAGCTAATAATTGTTTAATATTTTTAG
Seq C2 exon
GGTTTTCGAGGACCACGTCAAGTGCCAAAGAAAATGGTTATTACAGAAAATAGTGACCCAGCTGCTTCACTTGAGTCTGAGAAACCTGGTCCTGCCTTTCTTTCTCCATTGTACAGCACACCTCCTTTGTTTCCTACAATTGGCAAGAAAGATGCAAGTAATATGCCAACAGACTCTGAGAACATTGTCACTTACAAGAACAGAGAACGAAATGGCATACCTTTTTCTTCAGTTATCTCTACTCCATCCTTCAAGATTAACCCAGAAGTGCTATGTGAAGAAAATTATGTTTGTTCTCCTGTCAGTTCTGTAAATAAGCATTCAGATTCTTTACTGACTGATGAGTCCATGAAAAGAGACAGTTTGGTATCTCACAGTTTAGGAGTTTCACAAAACATTAGAAGCAAAGCCCAGATATTAGCTCTTCTGAAGTCCACATCCACAAGTACGTCTAAGGAGTTAAATTCTGAGATTATAGGCCATTTCCCTCAGATACAACCACAAGGAAGTTTAGAAATTCCTGCTGAACCAAATTGCTTACCTGAACAGGAAGAGTATGCTGAAGTGAAGCGCACAGAAAGTTTACACAACCAGCATCAATCAGAAAATACCATGAGAAATAAAAGCCGGTGGGCCGTGTATTTATCCTCACAGAGTTCACCTGTACATTCTTCTACAGTAGATGGAAAAGATATAGAAAAGAAACCCAAGACCCAAGAAGGTCATTTAAACTTGAAAGACCTTTCGATGCAAAACAGGATCCAGTTCTTGGAAACATGTGCTGAAAAGGGAAAAAGGTATAATGAAGATAAGTCAATAGATGATAATGATCAATCCTGGGATCAAGAAGGAAAACTAGAAATTCCTTCATTCTGTGAAAACAGTAGCTTACCAATTAATTGTAACATTGTAGTAAATGATGGCTTATTATTAGATTCTGACATTCAAAAAAATAATAAAAGATCTGTTGATCAAAATGACCAGATAGGCAAAAAAGGATCAATTCTTCTTAGAGAAAAAGCACAGGAGATAAATATAAATGGAACACCAGAAAAGAAGTATGAACATCTACAAATTGAATCTTCACTAAGTAACAATTCTGGGATCTCTGATGATATATTTTCTAAAAGTAGTACTAACAATGAAAGCCTTAGTAGTATTCATGAACCCATGAGTGATATATCACAGCCATTTGTGGAAGTCACATTTAATCTAAACAATTTTGAAACCAGTGACACTGAAGAGGAATCACAGGAAAGCAGCAAAACTTCCCAGGATTCAGAGGATTCAACTTTGGTTAATAGCAGCAATTCAAGATGTGAGAATATAAGCTGTAAAGAAGTTGGCAGTGAACATCTGCCTCTCTTAACGTCTACTGGGGGCAAACTTTCAGAGACATTTCCCATGAAAGAGATTCTGCCTTCACAGTTTTGTGATAAAACTTGTGTAGGTTATGACACAGAAACTTGGAAAGCTGGAAACACTGGAAAAGAAAGAAAGGAGGTGTGTAGTGACACATTAAGCAATTTTGACTCATCTTTAGAGTGGACTGATGATAGATATGTAGAAAATGATGAAGGCGCTAATAAATCCATTAGTGCTTCCTTCCCAAGTAAATCTGAAAGTATGAACACAAATTTACATATTCCTCATCTTTTAAACATAGCCACTGATCAGAAACCTGAAAACAACCTATTTTCAGAACAGGCTCAGACTGTTCTGGGAAGTGACTTAGACAAAACAACCAATCAGGTTTTACCGTTAACCTCTAGCAGTGGCAACAGTATCCAGATATTAAATGCCAAACAGATTCACTCCAAAGAATGTACTGCACTTGATAAATCACAGACCCAAGGTTCCAATTCTTTGTGTTACCCTTTGGGAAAAACACATATTTCCAAAGACACAGAATCACATATTTCTGAAGCTGAAGAGGTGGGAAGGAGTCGAGGTTTATCCCAGGACCATATTGATGTAGAAACTTCTGGAGAAAACAAACAATATGGGAATAATCTTAGAAATTCTTCAGAAATTTCTGGATTAGTAAATAGCATTTCTCTCTTAAAATCATTGACTGAACACAGTACGGCTTTGGAAGGCTTGGAAGTATTGAAAAAGAAAAATACCTCCTTGAAACAACAAGGAACTCTGCAGACATATGAGCCAGATAGCAGTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026936:ENSBTAT00000049376:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.559
Domain overlap (PFAM):
C1:
PF103824=DUF2439=PD(33.8=43.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCAGCCTGCTGGTTTAA
R:
ACAGAACTGACAGGAGAACAAACA
Band lengths:
346-1016
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]