RnoINT0168989 @ rn6
Intron Retention
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231889456-231891617:+
Coord C1 exon
chr2:231889456-231889641
Coord A exon
chr2:231889642-231889942
Coord C2 exon
chr2:231889943-231891617
Length
301 bp
Sequences
Splice sites
5' ss Seq
ACTGTACGT
5' ss Score
6.33
3' ss Seq
AATTGTTTTAATCTATTTAGGGT
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTGAAACCTGGAGATGACTTGGAAACTGACCGGTATTTAATCACAGTTGAGGAGGCTAAGGCTGCTGGAAGCAGAGCTGTTGAACCGGATGGCCCTAGAGAAGCCCTGGAGTCAGGCCCAAGGACCCTTGTATCCTCCAGCCGGTCTCTTGGGTGTCAGCCATCTGGCTTAAAAAGGAAGGCTACT
Seq A exon
GTACGTTTCTATGTGGGAACTAATATGTCAATGTATAATTAAAAGGTATTTTTAAAACTAGTACATTTTTTATCATAGGTTGCTGTTAAAATGGTGCTCCATTGTTTACTTAGGTTAACACAAAAGTAAATCCACGTTAGAAAAGTCTTACTAATACATGTTTATATTTTAATTTAGCGTATTTAAAATATTATTTACCTTAGGCAAAACATACATGTTCTTTGTTATTCTTTTTAGCAAATGAATTTCACATTTTCCTTAGAAATAATGGTATAGCTGATAATTGTTTTAATCTATTTAG
Seq C2 exon
GGTTTTCAAAGACCATATAAGATGCCAAAGAAAGTGGCTGTTACTGAAAACAGTGGACCAGCTGCCTCGCTTGGCGATGGGAACTCTGGCTTGCCTGGCCCAAGATTTCTTCCCACGTTCTCCAACACACTTCCTTTGTTTTCCACTGTTGGTCATAAAGATGTGACGACTACGTCAGCAGACAACGAGAGTCCTGTCACGTTCAGGAACACAGAGAGAAGTGACATGTCTCTATCATCTCTTTCTTCATCCTTCACGATTAACACAGACACACTAGGTAAAGAGGACAAACTTTGCTTTCCTGTAAGTTCTGAAACCAAATATTCAGACTCTTTATTGGCCAGTGAACCCATGAGAAGAAATGGCTTGGACTCTTTCTGTCCTGGAGTTTCACAAACCATCAGAAGCAAAGCCCAGATATTAGCTCTTCTGAAGTCCAGCTCAACTACCAGGAAGGATCTGCCTGATGAGAGTACAGGACACGTTCCTAAGATACAACCACATGGCTGTTTGAAGATTACTTCTAAGCCAAAGGAAGACTGTGCTGAAACACAGAGCACAGGGAATTTACACTGTGAGCAGCAGTCAGAAAATCCTACAAGAAGTACAAGCCGGTGGGCCAGGTATTTACCCTCCCAGAGGTCATCTCCCTGTTCTGCTAGAGATGAAAATGATACACAGGACAAACCGGAAGCCCAAGAAGATGTGAACATTTTTAACTTGTCTGAACTTTTGGTACAACAAAAGTCAGAGCTCTTTGAAACATGTATTGAAAAGGGAGAATTATACAGTGAGGACAAACCGATAGATGATTGCCAGTCCTGGAGTCCGGAAGAAAGCTTAGCACCTTCATTCTGTAAGAACAGCAGCGTATGGGTTAGCTGCAGCAGTAAAGAAAGTGTCGACTTATTGTCAGAATCTGACACTCAGTACAGTAGCAAAGTGCCTTTTAATCAAAATGAGAAGGTGTGTATACAAGGGTCACTTTCCACTCAAGGTATTCAGGGGGCAGATGCAGATACATTGGAACCGGAGTATAGACCACTGTCACCACTGTCAGAAATAGAACATAAACAAATTGAAGTTGAGTCTTCTCTAAGTACCAGCTCTAGAATCTCTGATGACATTGTAGACATGGTTTCTAAAAGCAGTGCTGAGAGAGAAAATCTGGATACTGTTCAGAAAGCTGCACAGCCATTCTTGGAAGTTTCTTTTAATCTGAGCAACTTTGAGGCCAGTGACACTGATGAGATGTCACAAGAAGACAGCAGACTTTCCCAGGATTCAGAGAGGTGGGAGAAGGAGGTTGTGCTTATAGATGATTCCTGTGTTCAGAAGAGCTCTGGGGATATAGGCTGCCGAGAAATTGCAGGAAAGCACTTGCCACTCCTGTCGTCTGCCGATGGCAAGCCTAAAGAGGCCCTCACTGCTACTGTGACTCTGTTGTCAGAATTCTGTGATAGAACCTGTGTAGGTTTTAATTCAGGACCCCATGAAGATGCAAACACTGGCAAAGCACTAGAGGGGCAGTGCTACGGAGACACAGGGAGCAGTTTGGACTCGTCTCTGGGGTGGAGTGAGGAAGTGCCAGGGGACAGCAAAGAAGATGCTAGTGAATCTATCCAAGGAAATGCAATTAATTATGGTAGTGTTTCACCCTCAAATAAACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980:ENSRNOT00000014695:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.483
Domain overlap (PFAM):
C1:
PF103824=DUF2439=PD(33.8=43.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTGAGGAGGCTAAGGCT
R:
TGAACGTGACAGGACTCTCGT
Band lengths:
349-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]