BtaINT0005816 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPG1]
Coordinates
chr6:14191719-14193657:+
Coord C1 exon
chr6:14191719-14191805
Coord A exon
chr6:14191806-14193471
Coord C2 exon
chr6:14193472-14193657
Length
1666 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTTTAATAATTCACTGTAGCCT
3' ss Score
6.12
Exon sequences
Seq C1 exon
TTCATTCCCTTGGGCACTGAAGAAGAGACTGCTTTTCTAGCTGTTATTCCTAAACAAATGGAGAGAGAAACCTGTAATGACCCCAAG
Seq A exon
GTAAAATTTGTGAATTGATTTTTTAACCCACTGTTTTCCTGCTGTTTTTTACACAACTTTGAGTTCGTAGACAGGTTAGTGAGCAAAATGAATTAACCTGATTTTAAGAACAAGAAAAACTAATGACTGTTACCCCTTTTTTGGTCTTGAGCCATCTATCTGTTACTGATTAATGCATTATAGGATACCCTGGGGATTGGACACGATATATATATAAAGTACAGTTAATGAATGTTCAGTGCAGAACAAAGTGAAGATGTCCATGGCTTTTCATTTACTATAGTTTACTTCACCACTCTAACTTCAGGCTAAATGGGTAGAAGTATATATAACCAAAGCTCTAAGTAGTACTACCCACTCCGCAGCAAAAATTGATAGAGATAACAGGATATATATGGGTGGGTTTTGTAAATGATGATTCTGTTCTTAAAACTCAACATACCTCTGGAAAAGATAGACGTAGCAGCAAAGAAAGCAAGGCATTTATTTGTTTATAGAGAATTTGTATTCCCCATCAAACAATGTAGAAAATACAGTCTTTAAAGATTTAGACTTTTTTTTATTGATATGTGTTATATTTTAAAATTCAGAGTGTTTTCAACAAAACTCCTGTTCCAAAGTCATTTTAGTTCCTTTAAAATGTGTGGTTTAAAATCTTAATTTTTAAGTAAGAATGTTCAGATTATATATTATTGTCACTTTGTTAATTTATCAGTTAGAAATAACTCATTCTTTACATACTTTGCTTCAGCTCTACACACTATTTTTCCATCTTGTGGGTAGACTTTGTCACCTTGTGTAGAGTAAAAATCCTAGAACCCTCAAGGGGGCAGCAGAGAAAGCCATTTGCAGTGTGAAAGCGGACCAGGTCTCTGAGTGGGTGAGAGCACCCCTCTGAGGTACATGTCCGTCTTGGTACTCTTAGACCTCCTTTGTCCTCAGAGCTACAGGAGCCGATTATCTGGGAGGCTGAGAGCCCAGCATCTCCCTTGCTAATAGCCTGATGGTTTACAAAACCTTTAAACAAAGGAAATGCTTCCTCCGTTCCTTCTCTTTCTTCCCTTAACACATTCCAAGCATGGTGTTAAATGCACATGATACCTTGATGAAGCAGAAGAGTTTCTGTCCTCAAGGAGCTTGCAGTTCAGTTAGTAGACAGAAAAGAAGACACTTCATTGTAGTGTAATATGATGTCTATAGGGGCTTTCCCAGTGGCTCAGCGGTAAAGAATCCGCCTGCAGTGCAGGTGACACAGGAGACACGGGTTCAAACCCTGGGTCAGGAGGATCCCCTGGAGGAGGGCATGGCAGCCCAGTCCAGTATTCTGGCCTGGAGAATCTCATGGACAGAGGAGCCTGGTGAGCCACAGTCCATAGGGTCCTAAAGAGTTAGACACTGAAGCAGCTTAGCATGCACTCACGCACATCATGTCTGTAATGCAAAGCTGTGGGGAAGTTGCTGGTGGTTCAGTAGCTAGGACTCTGTGCTTTCACTGCCTAGGGCTTAGGTTTGATCCTAAGTTGGGGAACTAAGATCCCATGAGCTGTGTGTCATGGCCAAAAAAAAAAAGTAATACTTAATAGAAAACTGAATTATGCATTGTTTTCTTTGTACATATGCACTGTAAATATATTTCTCACTACTCGTTTTTAATAATTCACTGTAG
Seq C2 exon
CCTGTTGAGTTTCAAGGGCACCAAGTGAAAGGCTCCGCATCTAGCGCTGTGATGGTCAGAGGACACAGCTCACAGGTTGAATGCAGTCAGCTTTCGGATAGCACTGTGTATGGAAGCTGCACGACAAACACTTGTTTTTTGACACCAGAGTTGCCTAGCACTCGTATGCAGATGGGCTTCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026936:ENSBTAT00000049376:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=NA C2=0.258
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCCTTGGGCACTGAAGA
R:
CTGCAAGAAGCCCATCTGCAT
Band lengths:
271-1937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]