BtaINT0005920 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPJ3]
Coordinates
chr5:308156-311322:-
Coord C1 exon
chr5:311249-311322
Coord A exon
chr5:308308-311248
Coord C2 exon
chr5:308156-308307
Length
2941 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GTGTCAAACTTCCATTAAAGGTT
3' ss Score
6.87
Exon sequences
Seq C1 exon
GAGAACAATACTTGGAAATGATAACAGAGGAAGAACAAGAAAAACCTGATGAAGATGAGAATAACTATGCACAG
Seq A exon
GTATGTTATCTGGTGTAGTACTGTATGAGAAAATGTGTATCAACCAAGGCAAATTAGAATGGAAACATAAGTTAACACCCATCACAAATGAGTTAAAGTGAAAGTTCAGTGAAATTTTGTGAGGAATACCAAATTACCGTTTCTCCTCAGGAAGATCCACTATGTGATAACCCTAAAGAAGGAGCAAACCTAAAGGAAATATCTCCTAATCTCACAAATAATATACCTGATTGTGAAGAAAAAGATGCATTTGGAGTATCTGTCTCTCTAGTATTCCAAGCATTTCCTGAACAAAAAGAACCCAGTCTCAAAAATGTTTTTCCGTGGTCTGTAACTCTGGATCCCTTGGATAGACTTGTCTGTCATCTTCAAAGCTTTGTTTTCCCTGAAAATAAGTAGACTTTGAAAATTATTAACTAGACGTTGCACATGTGTTTATGAAAATTTAAGAGAGTTTTTATAATGATACAGAAAATAAAAAGGTAGGGGAGCCGGTAGCTATATTCGAAGTGAAAGACCAAGAGATTGATATGCAAATGTCACAAAATATAAGGCAAGATCAAACTAATCGGAAATTAGACATGGGACAGGCATGTCATTCTAGTCTGTGGTTTGTCTACTCTGGTAAGATGAAATATAGAATTCAAATAAAAATTCACTTTCCCCTTGCTGTTGTTAAAATACTGATCTGAAAAATAAAGCAATACAGGACTGGTTCCAGAAGCCACTGCATGCAGATAATTGCAGCGCTAGTGACATTAAAAGCATGGAACCTGAATTAGAAAATGGGAATTCTTCTCCACCTAATAGTCACAGCGCATCTGAAGTGTATGTAAATGAAGAATTAGAGAAGGATATGCAGAGGTTTAAGAATGAAATAGACATGTTTCAAGTAGAGTTGCTGGCTCTGGAAAAAGAGAAAATTTAACTTCCAAAAGAGTTTCTCATTTTCTCTTGCTTTGATTTTTCTCTTTCTTGATGATGTGGTCCATTTTGATTTTCCATTTATGAATAAAGCGGGATAATCCAAAAAGGTAATTGTGTAGAAATCTATTATTATCTCAATAACAGGAATTCAGGAAACTATTTCCATGGCTTTTGTCCTTCAATCAATTCTCATATCTAATTCTTCTCCGTCAGTCTTCATATGGACTGGGAAACTCATTTAGCTATTTACCATGTGGGTGTCTGAGCCAGAATAAGCACCAAGGAAATTGCTTAAGAAGAATAATCAGCTAGGTTTTTGTGTCTTTTTTTCCCCCTTTAACTCTGTTGGGTTAAATATAAGTTATATTTCCATAGAATGGGAAGAAAGCACTGACTGAGAGATGGGACATGAACATGGGTTCCCTCTAATCTCTTCATTGTGGTTGAATATGTGTGATCTTCTCTGCTTTCTGCAATCGCTGGGCACTTAGATTTCCAGCATGGCTGCTTCAGGATCTTTTTAATAACAAATACGTGTGTTCCCACGTATGCTTTAATCAGCACTCTCAGATGTTTCTTTTGAGACAGACCTTTCCATTATGTTGTTTACTAAAATGTAGAAAGTTTTGACATGTGTGATTTTGTTACATAGATTGTGTGTGTGTGTGTGTGAAAGTTGCTCAGTCATGTCCAACTCGTTGTGAACCCCTGGACTATAGCCTGCCAGGCTCCTCTGCCCATGGAATTCCCCAGGCCAGAAAGAATACCAGAGTGGCTAGCTGTTCCCTTCTCCAGAGGATCTTACTAACCCAGGGATCGAACCCAGGTCTCCCCCATTGAAGGTGGATTCTTTAATATTTCAGCCACCAGGGAAGCCCATAGGTAGTATAAACCCTGAGCAAAAAAAAGGGAAAAAAAAAAGTGTTTATGTACAAAGGAGAAGACTTAGTTCTGAGATGCTGTGAGATTGTTCTTTCTTCAGTAATAGGTTTTTAAAATTGTTTGTTTGCTCTTTTGTGTAAGAGGTGCTTTGACTGAGTTTGAACAACAGACAAAAAGAGAAAAAAATAAATAAGCAAAAAACTCTATGTATTCTCCTATATTAAAAAAAAAAAAAAAAAAAAAGGAGATGAGCCCTACCCCCAACTAAGGCATTGAGTTTCTGTGCCAAACTCACGCTTTTAACTTATCTGATTAATCTGATGAATTCATTTGATAATATATAACATTCAACGTTCCAGAATTGTATCATCTCTTTTGGTGCCATAAAATGCTAGGGAGTGCCAGTTTAGGGGCCTTAAACAAAACCTTGAACATTTTTTTTTTAAATTTTATTGCTGTTTTTGGTAAATATTGGGGAACTACTAGGTAATTATTTCTATACCCTCTAGCTGTAAGGTTTGATGGTTATTGAATGTGGACTTGGGAAGCATTACTTATATTCCAGAATTCCACACTAACAACTCCTCAGTTTCATTCTGCTCCTTGTGTTTTAGTAAACTCTGGTTCATTTAATTTAGTAAACACCATCACTTTTTTGCTATCTCCCGGATCCAAGTGAAAAAAGAATTGTAAAGGGCAGAGGGGAAAGAATAGCTTTAGTGCAGAGAGAAGAATGTTTCCTTTCTGAGGCGCAAAGGTGTCACATCATCTACATCCGGCTGTTTAATGGAAAATCCAGGTAGTAAAGACCAAAGAGGACAGATTTTGTGTCTTTGTCTTTTTATTTCTCTGTTTCTGCCAGTCAGATGGAGAAGACTGAATATGAATAATTGCATCTTATTAAGAAAGCCATTTTTGAAATTTTGGGGAATTTTGTTTCTTTTCCTCAAACAGAAAGGAGCGGATTTTAAAAAAATTTCAGTGACTTGTAAGTGATAAAATTAAAATAAACACAAAAATATTTTTATCACTTAAATTCAGGGTGAGCACTGAGTCAAATAATAAAATTGAAAGCAAAGATCTTTATAATCAATACATAGCAATTATTCTTAGTGTCAAACTTCCATTAAAG
Seq C2 exon
GTTGAAGAAGAAAAGAAGCACAAAGGTAGTGAAGTGGAAGTATCAGAGAACATGTGCTATGCTGCTGATGAGAGTGGATTGTTTCAGCAGAGAAAGAGTGGAGGAAACAGCAACCAGGAGTTTCCTGCTATGCAGAATGAGGGTTCTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027770:ENSBTAT00000014687:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.725
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]