BtaINT0006075 @ bosTau6
Intron Retention
Description
Bos taurus zinc finger protein 582 (ZNF582), mRNA. [Source:RefSeq mRNA;Acc:NM_001105026]
Coordinates
chr18:63944877-63945306:+
Coord C1 exon
chr18:63944877-63945003
Coord A exon
chr18:63945004-63945239
Coord C2 exon
chr18:63945240-63945306
Length
236 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGTTTTTCTCTGACATCCAGGTC
3' ss Score
8.65
Exon sequences
Seq C1 exon
GGGTCAGACTTATTCAGGGATGTGGCCGTAGTCTTCTCCCAAGAAGAATGGGAACAGCTGGCACCCACTCAGAGGGACTTGTACAGAGACGTGATGTTGGAGACCTATAGCAACCTGGTCTCCCTGG
Seq A exon
GTAAGGTCTGTTACTTTGGAGGTTACCCCAGGCCACATGGGTTCCTTGTCAACGTTGAGGGTCTTTTGAGAGGTTAAAGGGCAGCTCCTTGTCCTGAAGCTGCATCTGCCCCAACCGTCATGTGACTCTCCTATTCCCTTAGCCCTTCTTGCCTGTCTTGCTTGTTAACCAGGCCCTGGTCTGAATTCCGAGGCCCCACAGCATAACCGGGTGGCATGTTTTTCTCTGACATCCAG
Seq C2 exon
GTCTTGCCATTTCCAAACCTGATGTGATCTCCTTCCTGGAGCAAGGCAAAGAGCCCTGGACGGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030348:ENSBTAT00000063919:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTTATTCAGGGATGTGGCC
R:
CACCGTCCAGGGCTCTTTG
Band lengths:
188-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development