MmuINT1035652 @ mm10
Intron Retention
Gene
ENSMUSG00000030443 | Zfp583
Description
zinc finger protein 583 [Source:MGI Symbol;Acc:MGI:2682297]
Coordinates
chr7:6323647-6325579:-
Coord C1 exon
chr7:6325453-6325579
Coord A exon
chr7:6323743-6325452
Coord C2 exon
chr7:6323647-6323742
Length
1710 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTTGTGTTTCTTGGAAGCAGGAA
3' ss Score
4.87
Exon sequences
Seq C1 exon
AATTTGCTGACATTTGAGGATGTGTCTGTAAATTTCACTCAAGAGGAATGGCAGTGGCTGAGTGACACACAGAGAGATTTGTACAGGAAGGTGACATTGGAGAACTATAAGAGCCTGGTGTCACTGG
Seq A exon
GTAAGGCAGTCTACAGAATCCCAAGTCTGTGTTCCATGAACTGTCTCTGGGTCGCTTTACTAAATTTCCTCTTTTTATTAAAAATTTTAAAAATTATATTCAACTCTATCCCTTTTTCTTTGTGTATGTTTATGTATGTGTCTGTGTGTGAGTGTGTGTGTATGTGTTTGTATGTGTGTGTGTGTATGTATGTATGTGTGAATGTTTGTGTCTATATGTGTGTATCTATGTATGTATGCATGTGTTTTGTATGTGTGTGGATATGTGTATGTATGTGCATGTATTTTATATGTGTGTGTATGTACTTATGCGTGTGTGAATATGTGTGTAAATGTGTATATGTGTGTGAATGTGTGTATGTGTATATGTGTATGTGTGTTTGTGTGTGTGTTGGAGAACTGTATGTACATGCCACAATGTGCATGTGAAGTCAGAAGACAACTCCATGGAGTCAGTTCTCTCTCCCACCTTTTCAGGGGCTCTGAGAGTGGAACGTGGGTCATCAGACTTACACAACACACACTTTTCCCATTTTATTTGCCTGATTTCTCTTCTTTTAAGCCATATGGTGACACATGCCTATAGTTCTGAGGGCTGGTGTATCAGTCAGTCTTCCTAATTCTGTAACCCTTTAATACCCTTCCTCATGTTATAGACGTCCACAACCATGAAAATATTTACGTCGTTACTTCATAACTGTAACTTTGCTCTGTTATGAATTAAAATGTAAGTATCTCAGTTTTCTGGTGGTTGTAACCCCTGTGAAAGGGCCTTTCAACCCCAGAGGGGTCGTGATCCATAGGTTGAGAACCACTGCTCTAGGGGAACAGAACTGATAGGATTAGTAAATATACATGTATTACATATATGTATACATACACACATGTATATATGTGGGACTTATTAGCTTACAGGCTATGGTCTAGCTAGTCCAACAGTGATTGTCTACCAACAGAAGGTCCAAGAATCCCGAAGTTGTTCAGTCCATGAGGCTGGATGTCTCAGCTGGTCTTCACTATATACCAGAATCCCAAAGAGGTAGGCTCTAATGCCAATGAAGGAGTGAACTTACCAGAGAAAAAGATCTGGATTAAAAGTGGGTCTCCCCACAGGGCAGTGGTAGCACATACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAAATATCAGTGAGCTTGTTCACTGAGACCAGCCTGGTCTACAGAGCAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGCCTCAAAATAAAATAAAACAAAACAAAATAAAATAAAATAATAAATAAATAAAATAAAGAGTGGGTCTACTTCAAATACTTTGAGAAAAAAATTCCTCCCAGGGATACTCAGCCACTTGGGTTTTAGTTAATTCCACATGTAGTCAAATTGATAACCATGAATAACCAACACAATTGGGGCGGAGGACTGCTTTGGGGAAACAGCCTGGGCAACCTAGCAAACCCAGTTCCAAAAGTTCAAAGAGAATTGTTTGCCTTACCCCACCCCCCCACCCCCACCCCCAGTTTCTACTCTCCAAATGAGTTACATTTTACAGAATTACAGCTTTTGTAGATTGCTCCTTATTGCCATTTACTCTAAAGAATATTTCCCATCCTCCTCCGCTCCCACCTTTCTGACGAGCAGCCAGCTTGATTTGACCTCTGAGAGTGGCTAATTCCTCTTGTGTTTCTTGGAAGCAG
Seq C2 exon
GAATTCCTGTTTACAAACCAGCCGTGATCTCATTACTGGAACAAGGGAAAGACCCCTGGATGGTGCAGAAGAAGGGAGCAAGAGACACATGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030443:ENSMUST00000062765:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCTGACATTTGAGGATGTGT
R:
CAGGACATGTGTCTCTTGCTCC
Band lengths:
222-1932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types