BtaINT0165748 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000801 | ZNF583
Description
zinc finger protein 583 [Source:HGNC Symbol;Acc:HGNC:26427]
Coordinates
chr18:63910464-63910967:-
Coord C1 exon
chr18:63910827-63910967
Coord A exon
chr18:63910560-63910826
Coord C2 exon
chr18:63910464-63910559
Length
267 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTTTTATTTCTTGTGAGCAGGCG
3' ss Score
6.61
Exon sequences
Seq C1 exon
CTGTGTCATTTCAGGATCTGGTGACATTTAGGGACGTGGCTGTCAATTTCTCGCAAGAGGAGTGGGAATGGCTGAACCCTGCTCAGAGGAGTCTGTACAGGACGGTGATGCTGGACAACTACAGGAGCCTGGTATCGCTGG
Seq A exon
GTGAGGAAGTCTCCCTGTAAGGCGGAATCCGCACGGAGGCTGCTTTCCAGTGCCACGTTTGGGGAGCCTCTGCTGCACCTCACTACTGCTCCCCCAGATGAGTGTAGCTCTGTGGAGTTGGCAGCTTGGTTGGATGTTCATGCAGCTCCGTCTCCCCACCCCCAGAACTCGTCACCTTGCCCTCAGCTCCCTCCCCTTCCCAGTGACCAAGCAGCTTGATCTGACTGATGGGCCTGGCTAATGCCCCTTTTTATTTCTTGTGAGCAG
Seq C2 exon
GCGTTTCGGTTTCTAAGCCGGATGTGATCTCATTACTGGAGCAAGGAAAGGAGCCCTGGATGGTGAAGGAGGAGGGGCCGAGGGGAGCATGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000801:ENSBTAT00000053429:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=87.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCATTTCAGGATCTGGTGACA
R:
CTCGGCCCCTCCTCCTTC
Band lengths:
221-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development