HsaINT0187743 @ hg19
Intron Retention
Gene
ENSG00000018869 | ZNF582
Description
zinc finger protein 582 [Source:HGNC Symbol;Acc:26421]
Coordinates
chr19:56901370-56901870:-
Coord C1 exon
chr19:56901744-56901870
Coord A exon
chr19:56901466-56901743
Coord C2 exon
chr19:56901370-56901465
Length
278 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATGTTTCTTCTCATCTCCAGGTC
3' ss Score
11.88
Exon sequences
Seq C1 exon
GGGTCAGAATTGTTCAGGGATGTGGCCATAGTCTTCTCCCAAGAAGAATGGCAGTGGTTGGCACCTGCTCAGAGGGATTTGTACAGAGACGTGATGTTGGAGACCTACAGCAACCTGGTCTCACTGG
Seq A exon
GTAAGGTGATCTCGTCTGTTAGTTTGGAGGTTATCCTTGGGCATGTTCCTTCCTGGTCAGTTTTTGGGTGCTTTTCAGTCTTATGATTGGTTGGTCATTTTTGAGGGGTTAAAGGGCGGCGCTGTCGGCTGAAGCTGCATCCCCCTACCCCCAGGCAACTGTCCCATCTTCCTCTGGCACTTCCTGCAACTGCCTCTCCTGCTTGATGACCAGGTCCTGGATCTGAATTCTGGGGCCCCCACACCATAACCAGGTGGCATGTTTCTTCTCATCTCCAG
Seq C2 exon
GTCTTGCCGTTTCCAAACCTGATGTGATCTCCTTCCTAGAGCAAGGCAAAGAGCCCTGGATGGTGGAGAGAGTGGTGTCTGGAGGCCTGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018869-ZNF582:NM_144690:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAATTGTTCAGGGATGTGGC
R:
CTGGACACAGGCCTCCAGA
Band lengths:
220-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)