RnoINT0168411 @ rn6
Intron Retention
Gene
ENSRNOG00000034184 | Zfp583
Description
zinc finger protein 583 [Source:RGD Symbol;Acc:1562044]
Coordinates
chr1:71251598-71253435:+
Coord C1 exon
chr1:71251598-71251724
Coord A exon
chr1:71251725-71253339
Coord C2 exon
chr1:71253340-71253435
Length
1615 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTTCTGTTTCTTGGAAACAGGAA
3' ss Score
8.05
Exon sequences
Seq C1 exon
GACTTGCTGACATTTGAGGATGTGTCTGTAGATTTCACTCAAGAGGAATGGCAACAGCTGAGTGACACACAGAGAGACTTGTACAGGAAGGTGACATTGGAGAACTATAGGAGCCTGGTGTCGCTGG
Seq A exon
GTAAGGCAGTCTCTACAGAATCCCAAGTCTGTGTTCTGTGAAGTGTCTCTGAGATGCCTCTGGGTTGTTTTACTAAATGTCCCCCTTTTATTAAAAATTTTAAAAATGATATTTAACTCTATCTCTCCCTTTTTCTTTGTGTGTGTGTTTGTTTTTGTGTGTGTGTGTATTTGAGTGTATGTGTGTATATGTGTGTGAGTCTATGTCTATGTCTATGTGTGTATGTGTATATGTGTATGTGTGAATGTGTGTCTATGTGTGTATATCTGTGTATATATACATGCGCTTGTATGTGTGTGTGTTTTATATGTGCGTATGTATATGTGTCTATGTATGTGTATGTGTGTTTGTATGTGTGTGTATGTGTATATGTGTGTGTATATGTGAGTGTGTGTGTATGTGTATATGTGAGTGTGTGAGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGCGCAGTTGTGTGCACATGCCATTTTATTTGCCCAATTTCTCTGTAGTGCTTCTCAACCTTCCTAATGCTGCAGTTAGTTCTTTAATACAGTTCCTCATGTTGTGGAGACCCCCCCCCCCCTCATAAATTATTTTTGTTGCTACTTCTTAACTGTAACTTTGCTACTATTATTAATTGTAATGTAAGTATCTGTTTTCTGATGGCTTTAGGTGACCCCTAAATCCTAGAGAGGTCATGACCCTTAGGTTGAGCACCATTGCTCTAGGGGTACACAACTGATAGGAATAGTGAATATATATGTATATGCATATATGTATCCATACTCATATATACTTGCACATATATATGTGCATTTATTAGATATAGGGATTATATATAGGGATTTATTAGATTGGCTAATCCAGCAATAGTTGTCTACCAACCAAAGGTCCAAGGATCCCATAGTTGTTCAGTCCGTGAGGCTGGATATTGCAGCTGCTCTTTAGTATATACCAGAATTCCAAAGAAGCTCTAACGCCAATGAAGAAATGAACATGCCAGAAAGGAAGATCCAAATTAAAAGTGGGTCTTTCCACAGGGCGGTGGTGCCACATGCCTTTAATCCCAGCACTCAGGAGGCAAAGGCAGGCAGGTCTCTGTGAGTTTGTTCATCGAGGCCAGGGTAGTCTACAGAGCAAGTTCCAGGACAGCCAGGGCTACACAGGGAAACCCTGTCTTTAAAAAACAAAAAAACAAACAAACAAAAAAACGCAGGTCTTCCCACTTCAAATGCTTTAACAAAAACAATTCTTCACAGATGTACCCAGCCATGTGGGTTTTAGTTAATTCCACATGTGGTCAAGTTGTCCACCATGAATAACCAACACAGTCAGGAGTAGGGGAACTACTCTGAGGAAATAGCCTGGTCAACCTAGCAAACCTAGTTCCAGAAGTTCAAAGAGAATCCTTCCCCTCACCTCCTAGTTTCTGCTCTCCAAATACGTTACATTTTACAGAATTACAGCTTTTCTTAGACTACTCCTTCTTGTCATTTATTCTAAAGAATATTTCCTATCTTCCTCAGCTCCCACCTATAGTGCCTCTCCTTCCTGATGAGCAGCAAACTTGACTTGATCTCTGAGAGTGGCTAATTCCTCTTCTGTTTCTTGGAAACAG
Seq C2 exon
GAATTCCTATTTACAAACCAGTCGTGATCTCATTACTGGAACAAGGAAAAGACCCCTGGATGGTGCAGAAGAAGGGGGCCAGAGACACATGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034184:ENSRNOT00000039438:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCTGACATTTGAGGATGTGT
R:
CAGGGCATGTGTCTCTGGC
Band lengths:
222-1837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]