BtaINT0007204 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B9A9]
Coordinates
chr18:58205070-58209666:+
Coord C1 exon
chr18:58205070-58205162
Coord A exon
chr18:58205163-58208518
Coord C2 exon
chr18:58208519-58209666
Length
3356 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATGTATGAAGTCAAATTTAACTT
3' ss Score
-9.87
Exon sequences
Seq C1 exon
GTTTTCAAGCAAGCACACCAGAGGTAGTCTCCAAATTGGATCAAGGAGAACCATGGATGATGGATGATGAAACCCACTGTCAAACCCGTTCAG
Seq A exon
GTGAGTGAGAGACCAGCAGGGGGACAGGCTGTGGAAATGACCTTGTCAGAGAAGAGCCACAGCTGTGAGGGGGTTGGAGGATGGGTGAACAGTTCCTCCCTGCATTTCTCTCCCGGTATCAGAGAACTTTTCTTTGTAGGAGTTTCAGTTCAGTTCAGTCACTCAGTCGTGTCCGACTCTTTGTGACCCCATGGACGGCAGCACGCCAGGCCTCCCTCTCCATCACCAACTCCCGGAGTTCACTCAAACTCATGTCCCTTGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTCATCCCCTTCTCCTCCCACCTTCAATCTTTCCCAGCATCAGGGTCTTTTTAAATGAGTCAGTTCTTTGCATCAGGTGGCCAAAGTATTGTAGGAGTTTAAAGAAGAATGTATCCCTTTTTAGGAAATATTCTGTGTGTTCTGGGATCTGTTTCTTTATTTTACTGCCATCTTGATTTTTGTTTGCCTAGTGTTCTTTTTCCTACCATTTTCATATCTTTTCCGTCTCCATACTCTCCCACCTCATTTTCTATGAAATTCCCCCTTCCAGGACCTCTCGCCACAGAGAAGACTTTTTCTAAAAATGTTTGTTTTTGGCTGCGCTTTGTCTTCGTTGCTGCATGCTGGCTTTTCTCTACTTGCGGCGAGGGGCGCTACTCCCTAGTTTTGGTGCAGAGGCTTCTCATTGCAGTGGCTTCTCTTGTGGAGCACGGGCTCCAGAGCTCAAGAGCTTCAGTTGTTGCAGTTCCCAGGTGCTAGAGGACAGGCTTGATAGTTGTGGCCCACGGGCTTTGTTGCTCCCCAGCATGTTGGGTTTTCCCGGATCAGGGATCAAACTTGTGTCTCCTGCATTGGCAGGCAGTTTCTTTACCACTGAGCTACCAGTGAAGCCCTCCACAGAGAAAACTTTGAATTCCTCTCTGTCTGCTGCCGTCTACTGCCCCTTCCTGCTCCACTGTTCATATTGATTTCCTTTCTCACAACCATCCCATTGGATGCCGGCCCCAAAGTAGACTGGTCTTCACTGGGCCTTCTCTCCGCCCTGAGGTTTTACTAATGTTTTGCTTTCCCTTTTACTCAGTGATCTCTTGACCTTCCATGTTTTCTTCTTTCTAATAAGCTAACAAATTCCTTTGGCTCACTGGAGAAAACTCCCAAGTTGATACCTCCCCACTGTGATCCAGCACAGACTTGGTTCTGTACAATTTCCTCATCTCAATGGCAGCTCTCCTTAGTTCCTAGTAACTATCTGGTTGTGGATCATCTTCCCTCCCAGGAAACCCTACAAGTTAGCTTCTCCCTTACTCCTGTGCAGCCTCCATCCTGGCTAGTCAGACTTTACCTCCACTGTGGCCCCTTGCAGAGCTCTCCTCTGTAAAGGGCTCAGCTGTTCAGGATGAATTTTTAACTAGAAAATTATTTTAACATCCTGCATTCTTAGTTCCAGCCTCAACTCGATCATAATTCTTGCCTACTTCCAGTTAATTCCTTTGTATATTTACTAGTTCTGAAATTTCTTCTCATTTGTTGTAGACCTTACCATCACATTCACTTCCTGAAAGCTTTAATTTCTTTCCCCTGGTATCCTGATAAAATTAAGTACCAGGTAACCACATTCCCTTTCAGGACAAAAAAATTCTCTTTTCTGTGATCGTTATGACAGATCATCTTATTCACACAGAGATTTTCATCTTCCTAAACCGCCCAGTCTGTTCCATACATGGAATAGCTAGCTTTCTTGATTCCTTCCTCTATGAATTTTTTGATAGTGAAGTGTAAACTGGAACATTACAGCAGTCTGAGCCACTCAGACAGGAAAGAATTCACCTGCAAGGTAGTAGACCCAGGTTCAATCCCTGGGTTGGAAAGAGCCCTGGAGAAGGAAATGGCAACCCACTCCAACCCACTGGGAAGTTCCATGGACAGAGGAGCTTGCTGGGCTGCAGTCCGTGAGATTGCAAAGAGTTGGATACAACTGAGCAACTAACACACACACAAACACAGCAGTTGAAAAAACAGACCTAGAGCTTTTGTTCTAAGAGGATGAGACATGAATTTAATCAAAATTTATAATAAATAATATGTCTAGGTGGTGAAAAGTGCTGTGATGAAATTAAGTTGCCTAATGGACCAGTGTGAGCCAGGGCTCCTCCTTTAGGAAAGGGAGCAGCTCTCTGAGGTGCAGATTGTAACTTAGATGTGCTTGCAGTTGTCTGCTGTATAATTTTCTTTCTTTTTTCCCCTTCTTTTTAAAAATTTTTTGCCGAAAGACATGTGGAATCTTACTCAGATGCTAAAGAATCTGCCTGCAATGCGGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGATGCCCTGGAGAAGGGAATGGCAACCCATTCCAGAATTCTGGCCTAGAGAATTCTATGGTCAGAGGAACCTGGCAGGCTCCAGTCCATGTGGTCGCAAAAGAGTTGAACACAGCTGAGCAACTAACATACCGGGGATTGAACCTAAGCCTCCTGTACTGGAAGCAAAGAGGCTTAATGGCTAAACTGCTAGGGAAGTCCCTGTGTCATTCTCTTCATTGCCCTCATGCCAACAACAACACTGGATCCATAGGGAGGCCTGTCTTCCTCCAAATTGAGCCAGATTTCCTCCACCTCTCTCCCTCTCCATCACTCCTTCCCACCAGTTTTCACAGCCTGTAGCTGTTTTCCTCATGTTCTGTCTCTGCCCCACGAAGTGGTTTTATCCCGCTACAGCATGGGCTCTGTACACCTGTGAATGTGTTTGTGACTCCCCAACACTAGCACCATTCCTGGTCCACCATGGTCAGCAGTCAGGATCTGTGGACTGGATGAGTCCATATCACAATGTGGATAAGGTGCCCTGCAACCTCTGGGCTCCTTCTCACAGAACATTCTTGTATTTTACAGTCTCTGCATGTCTGCAAGGCTATTGTTTAGAAGGTATTCAAATCTGTACTTTTTCATTGTGAATTATCCAGCCCTGTGTTTTACACTAACTACTTTTTCCTTTTGACTGGTATGTGGCACTGTTCCAGTGTGCAGGGAACATTAAACATAGAATTTTATTTACACTTATAAAAACATCTCCATAAAGATTCCTCACATCAAGGTATTTTTAGGAAATTCATTTTTCTTCTCTTTCCTAGAAGTCTGGAAATTTGATGACCACCTGCTGGAGTACTTACAAAATGAGAGCATGGAGAAGAGACTAGAACAATGGCATGAACAGAACCCACTAGAAAATGCTGTTCATCAGAGCATAACTCATTTTCTGCTCAGGCAGCATCATGATGTGTTTGACTTACATGATAAATGTATGAAGTCAAATTTAA
Seq C2 exon
CTTTACTTTCTCAAAACCTCAGCTATGAAATAAAGAGCTCCAATGAGCTTATTGGAGATGAGAAATCCTGTCGCCATGCTGACAGTGAACAGTTTCATCCTGAAATTAAATTCCCCCAAAGCCAAAAACTCATCAGCTCCAAATCCCCACTCAATGAGCATCAGAAAACTAAAAAAACAGAGAAGCCTCATGTATGTGGTGAATGTGGGAAAGCTTTCATCAAAAAGTCTTGGCTCACTGATCATCAGATAATTCACACAGGAGAGAAGCCCCATCGATGTAATCTTTGTGACAAAGCATTCTCTAGAAAATTCATGCTCACTGAACATCAGAGAACACACACAGGAGAGAAACCTTACCAGTGCACTGATTGTGGCAAAGCCTTCCTCAAGAAATCACGGCTCAATATACATCAGAAAACCCACACCAGAGAGAAACGGTATATCTGCAGTGACTGTGGAAAGGGCTTCATCCAGAAGGGAAATCTCATTGTCCATCAGCGAATTCACACAGGTGAGAAACCTTACACATGCAATGAATGTGGAAAAGGCTTCATCCAGAAGACCTGCCTCATTGCCCATCAGAGATTTCACACGGGAAAGACTCCTTTTGTGTGTAGTGAGTGTGGAAAATCCTGTTCCCAGAAGTCAGGTCTCATTAAACATCAAAGAATTCACACAGGAGAGAAACCCTTTGAATGCAGTGACTGTGGGAAAGCCTTCACTACAAAGCAAAAGCTCATTGTCCATCAAAGGACTCACACGGGAGAGAGACCTTATACCTGCAATGAGTGTGGGAAAGCTTTTGCCTACATGTCTTGCCTTGGTAAACATAAGAAAATACACACAAGAGAGAAACCTGGAGATGCAATCAAGGGGGAGAATCCTGCCTCACAGACAAGTGATGCCATGCGGGAGAAGAGCCTTGTTAACCTGGTGGCTGTGCAGGTGCCTTCCATGGCCCTTCAGCCGTCAGTCAACATCAGTGGACTCCTAGCAAATAGGAACGTCCTCATAACGGGACCACCCGTGGGCAGGTGTGCACCCGCAGGAGATGACAGAGGGTCTGCAGAAGACAGAACCCTTAAGAACGCAGTGAGCATGGTTGTGCCTTCGGTGGTCAATTATGTTTTATTTTGTGTCACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037906:ENSBTAT00000025840:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF0013017=C1_1=WD(100=14.6),PF134651=zf-H2C2_2=WD(100=6.8),PF0403211=Rpr2=WD(100=15.1),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development