HsaINT0186997 @ hg38
Intron Retention
Gene
ENSG00000256683 | ZNF350
Description
zinc finger protein 350 [Source:HGNC Symbol;Acc:HGNC:16656]
Coordinates
chr19:51964343-51968673:-
Coord C1 exon
chr19:51968578-51968673
Coord A exon
chr19:51966215-51968577
Coord C2 exon
chr19:51964343-51966214
Length
2363 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTTTGTTCTTTTCTTTCTAGACA
3' ss Score
10.49
Exon sequences
Seq C1 exon
GGTATCAAGCCAGCAAACCGGATGCACTCTTCAAGTTGGAACAAGGAGAACAACTGTGGACAATTGAAGATGGAATCCACAGTGGAGCCTGTTCAG
Seq A exon
GTGAGAGAACCCACAAGACAGAAGGCTATGGAAGTCACATTCTAGACAGTCAGAGAAGGCAGCACAGCTGTGAAGGGGGTTTGAGGATATGTAAACAGTTCCTCTACTCATCTGTCTCCCAGTGTGAGACCAGTTTTTCTTTGTAGGAATTTAGAGTTAAAAAAAAACAAAACAAAACAAAAACTCTTTATCTCCTCAGAGATCTGATTATTTTATCTACATATTGTTTGTTTGCCTGCATAATTTTCTTCTTCCTCGGGTTTCAAGTATTTCCCTTCTTCATGTTGTTCCACCTCTCTTGTTACGAAATTCCACCTTCCAGGCCTCTTTCCAAAGAGGAAACTTTGAAGTCCTCACTGTTTTCGGACTCCCACCCCTTTGTGCCCCTTGGCTAATGCTGACCTCCCCTCCTAACACCTCCCCTGTGATGGATGTGGCTTCCTCAGGGTAAACTGGACTTTCGCTGTGCCTTGGCTTCCTTCGCTTCTCTTTTTCCTTATTCTTAGGTTCTCCAAAGGTCCCGTTCTCCATTTTCTCATCTGTGCCCTTCACTCTTCAAAATTGCCTTCATTCTAGTAAGTTTAAACTCCTTCCGCTCCCTGGAGGAGAGTCCCAAACTGACATCTCCCTGTTGTTATCTAACACAGATTTTAGTTCTGTGTAATTTACTTCATGGCAACTCTCCCCTGAGTTCCTAGTAACTGCAAGGAACTAGAATCATCTTTCCTCCAAGAAAACCATTAAGTTTGGATTTTCGTTTGTTCCTGTACATCCTGAATCTTGGCCATCTGGGTATTACCTGCCTGAAGAGCTCTCTTCTTTAAAGGTCTCTGCTAGTCATGATGCATCTCTAAGTAAAAAAGTCATTTTTTTAACATCCTACATTCTCAACTCCCGCCTACTTCCATTTGGTTCCTTTCTGTATTTAATAATTTGCTTTCGTTTTTTTCCCCATCGTATTCTGATGACACCAAGTCCCAGTAAACCATGTTACCTGTCAAATTTCTCATTTCAGTGATCTCTGTGATATAATACCATCTTGCTCACAAAGAGATTTCCATCCTCTTTCCTAAACCCTGCCTGGTGTGTTCCACACATATGATTACTTCCCTGACTCATTCCCTTAAAAATTATTCATTATTATTATTTATTTTTATTAATTTATTTTTTTTTTAAGACAGAGTCTTGCTCTGTGCCCAGGCTGGAGCGCAATGGTGTGAACTTGGCTCACCGCAACCTCCACCTCCTGGATTCAAGCGATTCTTGTGCCTATCCCCAACACCAGCACCATACCTGGCACACGGTGATCATTCAGTAAGAGTATGTGGAATGAATGAATCTGTTCTTTGGACGAAATGGGCCTCCAGCCTCTGGTCTGCTGGTCACAGTGAATTGCTTGTATTTTAAGGTCTGTTTTGCAAGGCACATTTAGAAAGCAGCCAAATCTGTCTTTATTATTAGTGATCTAACCTTGTTTTATGCTAACTGCTTTCACCTTTTAGTTTGTTTATACTATTACTTTTTGCCAATGTGCAAGGAACATTAAACATGGAGTTTTATTTACACTCAGGTCATAGGGTTATTACTAAGAGACACCTCACATCAAGGCATTAAAAAAAAGAATACTTTGGGGCCGGGTGCAGCGGCTCACACCTGTAATCCCAGAACTTTGGGAGACTGAAGCGGGCAGATCACCTGAGGTCGGGAGTTCGAGATCAGCCTGGCTAACATGGTGAAACGCCGTCTCTACTAAATATACAGAATTAGCTGGGTGCGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACTCAGGAGGTGGAGGTTGCAGTGAGCCGGGATCATGTCACTGCACTCCAGCCTGGGCTACAGAGTGAGACTCCGTCCCCAAAAAACAAAAAAAAAACAACAAAAAATACTTTGGCTGTGAGCCGGGATTGTACCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCCCAAAAACAAAACAAAACAAAAAATACTTTGGCTGAGCACAATGGCTCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAGACCCCGTCTGTAGTAAAACTACAAAAATTAGCCGGGCATGGTAGCAGGCACCTGTAATCCCAGCAACTTGGGAGGCTGAGGCAGGAGAATCCCTTGAACCCGGGAAGCAGAGGTTGCAGTGAGCTGAGATCGCAGCATTGCACTCCAGCCTGGACAACGGAGTAAAACTCCATCTTAAAAAAAAAAACAAAAAAAACAAAAAAACCACAACAAACTTTTACCCCAAATCTAAATGATAGAAATCTTTGTTCTTTTCTTTCTAG
Seq C2 exon
ACATATGGAAAGTTGATCATGTGCTGGAGCGCTTGCAGAGTGAAAGCCTGGTGAACAGAAGGAAACCATGTCATGAACATGATGCATTTGAAAATATTGTTCATTGCAGCAAAAGTCAGTTTCTGTTAGGGCAAAATCATGATATATTTGACTTACGTGGAAAAAGTTTGAAATCCAATTTAACTTTAGTTAACCAGAGCAAAGGCTATGAAATAAAGAACTCTGTTGAGTTTACTGGAAATGGGGACTCCTTTCTTCATGCTAACCATGAACGACTTCATACTGCAATTAAATTCCCTGCAAGTCAAAAACTCATCAGCACTAAGTCCCAATTCATCAGTCCCAAGCATCAGAAAACACGAAAATTAGAGAAGCATCATGTGTGCAGTGAATGTGGGAAAGCCTTCATCAAGAAGTCTTGGCTAACTGATCACCAGGTAATGCATACAGGAGAGAAACCCCACAGATGTAGTCTATGTGAGAAAGCCTTCTCCAGAAAGTTCATGCTTACTGAACATCAGCGAACTCATACAGGAGAAAAACCTTATGAATGCCCTGAATGTGGCAAAGCCTTTCTCAAGAAATCACGGCTCAACATACATCAGAAAACACATACCGGAGAGAAACCCTATATATGCAGTGAATGTGGAAAAGGCTTCATCCAGAAAGGAAATCTCATTGTACACCAGCGAATTCATACAGGTGAGAAACCTTATATATGCAATGAATGTGGAAAAGGCTTCATTCAGAAGACGTGTCTCATAGCACATCAGAGATTTCACACAGGAAAGACGCCCTTTGTGTGCAGTGAATGTGGAAAATCCTGTTCTCAGAAATCAGGTCTCATTAAACATCAAAGAATTCACACAGGAGAGAAACCCTTTGAATGTAGTGAATGTGGGAAAGCCTTTAGCACAAAGCAAAAGCTCATTGTCCATCAAAGGACTCATACAGGAGAGAGACCCTATGGCTGTAACGAGTGTGGGAAAGCGTTTGCGTATATGTCGTGTCTGGTTAAGCATAAGAGAATACACACAAGGGAGAAACAAGAGGCAGCCAAGGTGGAAAATCCTCCTGCAGAGAGGCACAGCTCATTACACACCAGTGATGTCATGCAGGAGAAAAACTCTGCTAACGGGGCGACTACACAAGTGCCTTCTGTGGCCCCTCAGACATCATTAAACATCAGCGGCCTCCTCGCAAACAGGAACGTAGTCCTTGTGGGACAGCCAGTGGTCAGATGTGCAGCCTCAGGAGATAACAGAGGATTTGCACAGGACAGAAACCTTGTGAATGCAGTGAATGTGGTTGTGCCTTCCGTGATCAATTATGTCTTATTTTATGTTACAGAAAACCCATAGGAAGAAAACTCAGATCTATGTGGAAAAGGGTTGAGCAAAAATTTGTAGTTCATTATGTGGCCGAAAAGCATACACTGAGAGAACATGTATAAGGCTGAGATAGCCTGATAAACTCATCCTATTAAAATGTATGCTGTGATACACAGGCAAATTTGATGTTAACCTAAGCACATACACAGCAATTGCTCGACTGTGTCAATTAAATGAGTAAAGGAAGCCCAAGTACTTTTAAGTGGAGGAAATGAAGTACTGTGAATTTTTAAAACAGATGAGATAATTGGTGTCGGGAGTGTTGCAGTGACTGAAAAGCTTCATAAGGGGCAGTTGGTGGGAAAGGGCTAATACTGTAATGGTGGAATGTGGGACACATATGTGTCAATTCAGTTTCCTTAGACCAGTGCCAGTGTGGAGGATTAATTGAAAACCAGGACCATAAACTTTCAGAACTTTGTATTATGCAGAGGGATCTGTGAAACTAGTCAATTTGTTTCATTAAACAAATATTTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256683:ENST00000243644:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains